Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 0.0e+00 1110.5 570 100.0
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 7.8e-312 1072.8 570 96.1
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 7.8e-312 1072.8 570 96.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.2e-311 1072.4 567 96.5
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.2e-311 1072.4 567 96.5
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.2e-311 1072.4 567 96.5
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.0e-307 1059.3 570 95.6
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 6.8e-307 1056.6 570 95.3
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.7e-305 1052.0 570 94.9
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 6.4e-305 1050.0 570 94.7
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 7.0e-304 1046.6 570 94.2
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.9e-301 1038.5 570 93.5
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 6.4e-297 1023.5 599 89.5
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.9e-293 1011.9 570 91.9
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 9.5e-293 1009.6 574 92.0
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 3.6e-292 1007.7 570 91.4
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.8e-275 952.2 548 89.6
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.1e-269 932.9 566 85.0
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 7.9e-263 910.2 554 83.9
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 8.7e-262 906.7 552 83.0
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.5e-261 906.0 552 82.8
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.5e-261 905.2 476 96.8
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.3e-261 904.8 570 82.3
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 9.6e-261 903.3 559 82.5
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.3e-260 902.9 555 83.6
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.4e-259 899.4 554 82.5
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 9.0e-259 896.7 549 83.2
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 9.0e-259 896.7 567 81.5
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 9.0e-259 896.7 505 87.9
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.3e-257 892.9 555 81.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.9e-256 889.0 565 81.6
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.5e-256 888.6 504 86.7
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 5.5e-256 887.5 515 85.2
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 7.1e-256 887.1 554 80.9
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.2e-255 886.3 501 87.2
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.7e-255 885.2 569 79.6
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 6.0e-255 884.0 522 85.2
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.0e-255 884.0 563 79.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 7.9e-255 883.6 541 81.5
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 5.1e-254 880.9 565 79.1
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 3.3e-253 878.2 573 78.9
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 4.3e-253 877.9 569 79.1
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 5.7e-253 877.5 568 78.9
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 7.4e-253 877.1 529 83.2
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 9.6e-253 876.7 538 83.1
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.1e-252 875.5 561 79.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 2.8e-252 875.2 576 78.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.7e-252 874.8 553 80.5
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 4.8e-252 874.4 554 80.1
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 6.2e-252 874.0 538 82.2
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 6.2e-252 874.0 557 79.7
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 8.2e-252 873.6 549 81.6
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.1e-251 873.2 566 80.0
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.1e-251 873.2 530 83.2
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.8e-251 872.5 543 80.8
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.8e-251 872.5 538 82.3
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 6.9e-251 870.5 540 81.1
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 9.0e-251 870.2 558 79.2
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 9.0e-251 870.2 555 79.8
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.5e-250 869.4 540 81.7
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.5e-250 869.4 582 77.7
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.6e-250 868.6 524 82.8
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 2.6e-250 868.6 529 81.9
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 3.4e-250 868.2 541 80.8
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.4e-250 868.2 544 81.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 5.8e-250 867.5 536 81.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.0e-249 866.7 591 76.1
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.3e-249 866.3 535 81.9
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.3e-249 866.3 548 79.6
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.7e-249 865.9 572 78.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.7e-249 865.9 562 78.6
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.5e-249 864.0 562 78.5
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.9e-248 862.4 558 78.0
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 4.2e-248 861.3 548 79.4
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 5.5e-248 860.9 537 81.0
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 9.3e-248 860.1 563 77.8
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-247 859.8 537 80.4
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.2e-247 859.8 544 80.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 2.1e-247 859.0 559 79.1
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.1e-247 859.0 574 77.2
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 6.1e-247 857.4 532 81.8
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 7.9e-247 857.1 538 81.2
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.0e-246 856.7 558 78.0
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.3e-246 856.3 579 76.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-244 849.7 547 79.3
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.6e-244 849.4 546 78.8
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.6e-244 849.4 556 78.1
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.2e-244 849.0 526 79.3
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 6.3e-244 847.4 575 76.0
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-243 846.3 572 76.6
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 5.9e-242 840.9 549 77.8
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 5.9e-242 840.9 560 76.4
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.0e-241 840.1 542 77.7
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.4e-238 829.7 537 77.3
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.3e-236 823.2 563 76.6
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.7e-236 822.8 552 75.7
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.2e-236 822.4 551 76.2
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 6.5e-233 810.8 557 74.1
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 8.5e-233 810.4 563 74.4
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.6e-231 806.2 468 85.7
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.1e-230 801.2 565 72.4
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 2.6e-221 772.3 576 72.6
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.7e-220 768.5 482 79.9
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 4.8e-220 768.1 503 73.2
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 5.0e-217 758.1 501 72.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 6.5e-217 757.7 558 68.6
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.6e-215 753.1 517 74.1
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 5.2e-214 748.0 558 66.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.5e-210 735.3 485 76.7
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 4.5e-210 734.9 405 90.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 3.7e-204 715.3 450 80.0
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.3e-201 706.8 445 80.0
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 3.0e-198 695.7 545 64.4
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.4e-196 688.0 497 70.4
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 7.8e-194 681.0 530 67.9
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 3.6e-191 672.2 539 62.7
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 4.9e-188 661.8 566 64.5
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.8e-186 654.4 562 65.3
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 2.3e-185 652.9 470 69.4
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 9.5e-184 647.5 530 63.4
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 8.1e-183 644.4 499 62.9
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.4e-173 612.1 549 62.8
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 2.0e-165 586.6 318 89.3
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 7.3e-160 568.2 512 58.8
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 8.1e-159 564.7 505 60.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 6.9e-158 561.6 342 84.8
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-156 557.0 494 59.5
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.2e-156 556.6 427 63.9
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 2.9e-156 556.2 492 61.0
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 4.9e-156 555.4 495 58.8
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.4e-156 555.1 495 58.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.3e-136 489.6 331 72.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.5e-132 474.9 492 52.2
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 2.9e-124 449.9 536 46.5
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 8.2e-111 405.2 593 44.2
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.7e-106 390.2 546 40.7
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-97 360.9 437 48.3
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.4e-88 330.1 346 55.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 1.3e-87 328.2 433 41.3
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.9e-70 271.2 171 83.0
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 6.6e-68 262.7 185 68.1
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.6e-66 256.9 559 36.3
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.6e-61 241.5 256 51.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.9e-55 220.7 410 38.3
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 3.1e-49 200.7 129 77.5
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.9e-48 195.7 507 32.0
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.6e-42 178.3 105 81.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.2e-39 167.9 106 84.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 7.9e-37 159.5 117 74.4
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.8e-36 158.3 80 98.8
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.0e-28 132.5 100 76.0
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-27 129.0 91 78.0
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.3e-26 125.6 137 51.8
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.6e-21 108.6 71 81.7
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 7.9e-21 106.3 65 83.1
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 8.7e-20 102.8 85 63.5
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 4.1e-17 94.0 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 5.9e-16 90.1 50 84.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.9e-14 85.1 53 81.1
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 4.2e-14 84.0 77 61.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 9.3e-14 82.8 55 78.2
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.8e-12 76.3 49 75.5
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-11 75.5 94 45.7
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 5.7e-11 73.6 43 83.7
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.9e-09 66.6 58 55.2
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 7.7e-08 63.2 52 59.6
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.1e-06 59.3 50 58.0
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.4e-06 58.9 46 58.7


User provided reference genes

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