Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 4.3e-296 1020.8 598 100.0
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 4.1e-246 854.7 599 85.3
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 6.4e-231 804.3 602 79.7
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 7.1e-230 800.8 598 79.8
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 2.1e-226 789.3 602 79.9
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 3.5e-221 771.9 591 78.2
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 7.8e-221 770.8 601 79.2
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 7.8e-221 770.8 601 78.9
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 1.1e-219 766.9 600 78.7
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 1.3e-215 753.4 599 76.6
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 7.8e-213 744.2 603 77.4
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 2.0e-208 729.6 627 75.3
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 1.6e-186 656.8 639 68.7
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.6e-133 480.7 620 55.8
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 3.6e-125 453.0 646 53.6
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 3.7e-85 320.1 652 40.2
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 1.4e-84 318.2 663 41.0
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 3.8e-82 310.1 659 40.4
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 5.5e-81 306.2 657 40.5
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 3.5e-80 303.5 652 38.8
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 6.0e-80 302.8 660 40.8
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.1e-78 298.5 665 38.8
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 4.3e-78 296.6 656 39.5
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 5.6e-78 296.2 648 38.4
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 1.3e-77 295.0 653 38.9
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 7.6e-75 285.8 639 39.6
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 1.0e-74 285.4 670 39.1
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 1.0e-74 285.4 658 39.1
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 1.3e-74 285.0 652 39.3
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 3.8e-74 283.5 665 38.3
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 7.1e-73 279.3 649 40.8
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 1.6e-72 278.1 668 38.9
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 2.7e-72 277.3 659 37.3
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 6.0e-72 276.2 657 39.9
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 3.0e-71 273.9 656 37.0
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 4.3e-70 270.0 737 35.8
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.3e-69 268.5 660 37.0
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 2.1e-69 267.7 659 36.7
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 3.7e-69 266.9 669 37.2
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 8.2e-69 265.8 632 38.4
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.1e-68 263.8 660 36.2
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 4.1e-68 263.5 643 37.3
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 4.1e-68 263.5 659 40.4
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.3e-68 263.1 657 36.1
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 1.5e-67 261.5 662 36.4
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.4e-67 260.4 656 36.1
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 1.1e-65 255.4 574 39.4
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 1.1e-65 255.4 660 35.8
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 3.2e-65 253.8 674 36.1
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 5.5e-65 253.1 667 36.4
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 7.2e-65 252.7 657 35.3
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.2e-64 251.9 650 37.8
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.7e-64 250.8 671 36.5
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 3.6e-64 250.4 639 36.9
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 4.6e-64 250.0 636 37.3
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 6.1e-64 249.6 654 36.9
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 7.9e-64 249.2 670 35.7
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 2.3e-63 247.7 600 39.7
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 6.7e-63 246.1 651 37.8
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 1.1e-62 245.4 630 38.7
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 1.9e-62 244.6 656 36.4
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 7.4e-62 242.7 627 38.6
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 2.8e-61 240.7 650 38.8
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 2.8e-61 240.7 658 35.9
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 2.4e-60 237.7 689 35.3
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 5.3e-60 236.5 662 35.6
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 5.3e-60 236.5 678 34.7
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 9.1e-60 235.7 656 39.9
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 3.4e-59 233.8 651 36.6
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 5.0e-58 229.9 656 39.3
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 6.5e-58 229.6 642 36.9
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 6.5e-58 229.6 664 35.1
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 7.2e-57 226.1 660 36.1
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 3.6e-56 223.8 677 34.6
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 3.6e-56 223.8 659 35.7
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 3.0e-55 220.7 669 33.9
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 7.4e-54 216.1 652 34.5
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 2.2e-53 214.5 578 41.9
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 3.1e-52 210.7 667 33.1
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 6.9e-52 209.5 668 37.3
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 6.9e-52 209.5 664 35.7
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 2.6e-51 207.6 646 37.3
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 5.0e-50 203.4 644 37.4
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 3.2e-49 200.7 633 33.0
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 7.2e-49 199.5 662 38.5
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 1.2e-48 198.7 674 37.1
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 4.7e-48 196.8 621 36.6
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 1.0e-47 195.7 547 36.0
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 3.0e-47 194.1 668 32.5
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 8.8e-47 192.6 645 35.5
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 1.1e-46 192.2 633 34.9
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 3.3e-46 190.7 632 34.8
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 1.3e-45 188.7 674 38.0
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 1.7e-45 188.3 681 32.5
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 1.1e-44 185.7 663 33.0
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 1.4e-44 185.3 637 32.7
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 2.0e-43 181.4 609 34.5
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 2.6e-43 181.0 636 32.4
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 5.9e-43 179.9 615 34.0
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 1.7e-42 178.3 630 31.7
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 2.9e-42 177.6 609 35.3
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 6.5e-42 176.4 609 36.8
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 1.5e-41 175.3 665 30.1
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 1.9e-41 174.9 662 33.1
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 2.5e-41 174.5 641 37.0
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 2.7e-40 171.0 695 31.7
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 3.6e-40 170.6 676 33.0
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 1.4e-39 168.7 634 33.3
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 6.7e-39 166.4 595 34.1
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 6.7e-39 166.4 646 32.5
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 2.2e-37 161.4 647 32.3
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 2.8e-37 161.0 627 31.1
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 2.8e-37 161.0 352 38.1
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 2.8e-37 161.0 634 34.9
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 2.8e-37 161.0 595 32.6
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 3.7e-37 160.6 653 33.8
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 9.1e-36 156.0 274 42.7
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 6.8e-31 139.8 660 29.4
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 1.4e-28 132.1 553 31.8
vmacro16713 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 5.4e-28 130.2 258 40.7
Duzib068G1391 Durio zibethinus HOM05D005518 ORTHO05D001269 1.6e-27 128.6 313 40.3
Ca_25438_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 8.6e-26 122.9 193 44.0
MD14G1162500 Malus domestica HOM05D005518 ORTHO05D001269 1.2e-24 119.0 354 35.9
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 9.8e-22 109.4 310 34.8
MD14G1162600 Malus domestica HOM05D005518 ORTHO05D001269 6.3e-21 106.7 202 39.1
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.8e-15 88.6 343 31.8
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 8.9e-15 86.3 210 33.8
Ca_16087_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 1.6e-11 75.5 166 47.0
Sc22g0004140 Simmondsia chinensis HOM05D005518 ORTHO05D001269 1.3e-10 72.4 106 50.9
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 2.3e-10 71.6 111 45.0
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 6.6e-10 70.1 421 30.4
HPP92_027039 Vanilla planifolia HOM05D005518 ORTHO05D001269 6.6e-10 70.1 328 30.5
Cfa018874 Carpinus fangiana HOM05D005518 ORTHO05D001269 1.4e-07 62.4 115 44.3
Actinidia08857 Actinidia chinensis HOM05D005518 ORTHO05D001269 6.8e-07 60.1 315 32.1
unitig_22.g5764 Utricularia gibba HOM05D005518 ORTHO05D001269 2.6e-06 58.2 636 25.2


User provided reference genes

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