Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 0.0e+00 1228.8 622 100.0
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 0.0e+00 1107.0 622 89.5
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 0.0e+00 1082.4 624 87.2
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 4.3e-312 1073.9 621 87.9
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.5e-310 1068.1 623 87.5
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 2.8e-306 1054.7 624 85.4
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 4.7e-301 1037.3 625 85.1
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 1.8e-300 1035.4 626 84.2
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 2.0e-299 1031.9 626 83.9
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.6e-285 985.7 626 81.6
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 8.5e-279 963.4 624 78.2
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 3.9e-255 884.8 637 70.0
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.3e-244 849.0 606 71.6
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 6.9e-212 741.1 474 82.3
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 2.5e-209 732.6 637 59.3
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 4.6e-208 728.4 612 61.4
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 2.3e-207 726.1 641 58.0
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 2.5e-206 722.6 620 60.5
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.1e-204 717.2 643 58.2
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 1.8e-204 716.5 623 60.7
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 4.5e-203 711.8 642 58.1
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 4.5e-203 711.8 618 59.9
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 9.3e-201 704.1 623 58.7
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 6.1e-200 701.4 642 57.0
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 6.1e-200 701.4 642 57.0
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 2.3e-199 699.5 650 55.8
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 1.5e-198 696.8 634 56.9
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.9e-198 696.4 647 56.3
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 2.5e-198 696.0 648 56.5
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.3e-198 695.7 647 56.1
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 3.3e-198 695.7 619 59.3
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 7.4e-198 694.5 615 57.6
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 7.4e-198 694.5 619 58.3
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 2.8e-197 692.6 625 58.7
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.1e-196 689.1 615 57.4
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 4.1e-196 688.7 620 56.1
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 2.6e-195 686.0 615 58.0
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 3.4e-195 685.6 641 54.9
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 3.4e-195 685.6 621 56.8
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.2e-194 682.9 615 57.4
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 2.9e-194 682.6 533 64.2
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 3.8e-194 682.2 646 56.2
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 3.2e-193 679.1 500 67.0
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 3.2e-193 679.1 624 56.2
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 5.5e-193 678.3 639 56.2
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 2.1e-192 676.4 615 56.9
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 6.1e-192 674.9 615 57.6
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 6.7e-191 671.4 613 57.1
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 6.7e-191 671.4 638 54.4
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 9.7e-190 667.5 630 55.7
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 1.7e-189 666.8 630 55.7
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.8e-189 665.2 615 56.1
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 2.4e-188 662.9 637 53.5
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 9.1e-188 661.0 636 53.9
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 9.1e-188 661.0 636 53.8
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 5.0e-186 655.2 640 53.6
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.2e-184 650.6 644 53.6
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.6e-184 650.2 654 52.9
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 1.6e-184 650.2 631 55.2
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 3.9e-183 645.6 645 54.3
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 1.5e-182 643.7 613 55.3
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.5e-182 643.7 601 55.9
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 4.4e-182 642.1 441 69.2
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 4.8e-181 638.6 607 56.3
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.1e-177 627.5 612 52.6
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 4.2e-177 625.5 631 52.5
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 4.7e-176 622.1 630 52.4
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 4.7e-176 622.1 503 61.0
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.6e-174 616.3 456 64.9
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 4.4e-174 615.5 638 51.3
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 7.5e-174 614.8 501 60.9
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 8.2e-173 611.3 441 65.8
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.0e-170 604.4 624 51.6
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 3.2e-169 599.4 624 51.1
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 3.2e-169 599.4 543 56.0
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 4.0e-167 592.4 624 51.9
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 9.8e-166 587.8 626 51.0
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.7e-165 587.0 683 47.9
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 9.1e-164 581.3 666 48.5
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 2.3e-162 576.6 386 70.2
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 2.5e-161 573.2 606 52.0
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 3.2e-161 572.8 549 55.2
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 2.3e-159 566.6 402 65.9
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 1.4e-156 557.4 612 49.5
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 7.0e-156 555.1 386 67.9
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 6.6e-154 548.5 543 51.9
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 8.6e-154 548.1 520 52.3
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 4.7e-152 542.3 558 51.6
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.5e-147 526.2 391 64.2
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.5e-147 526.2 391 64.2
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 1.0e-146 524.6 624 48.1
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.3e-146 524.2 387 64.9
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 3.9e-146 522.7 387 64.3
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.5e-142 510.8 528 52.7
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 2.0e-142 510.4 506 52.6
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.9e-140 503.8 588 48.3
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.0e-139 498.8 519 52.6
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.3e-137 492.7 460 52.8
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 2.3e-135 486.9 518 50.8
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 6.8e-135 485.3 481 54.1
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 2.3e-130 470.3 552 45.3
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.7e-128 462.6 467 53.1
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 6.4e-125 452.2 456 53.3
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 9.6e-121 438.3 461 49.0
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 2.4e-119 433.7 396 55.1
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 1.3e-117 427.9 458 51.7
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 1.3e-117 427.9 472 48.1
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 4.2e-116 422.9 393 56.7
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 7.3e-113 412.1 454 47.8
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.2e-110 404.8 459 44.7
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.8e-106 391.0 364 51.4
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.9e-105 387.5 264 67.8
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 4.5e-102 376.3 257 69.3
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.3e-90 337.4 531 38.8
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 5.1e-90 336.3 305 53.1
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 4.1e-87 326.6 450 39.1
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 9.0e-87 325.5 276 55.8
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.8e-82 311.2 388 43.6
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 4.8e-80 303.1 334 50.6
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 5.3e-71 273.1 203 60.1
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.4e-65 253.4 454 35.2
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.2e-64 251.1 160 74.4
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.6e-51 208.4 133 72.2
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.2e-43 182.2 195 43.6
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.8e-34 151.8 124 58.1
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 2.6e-33 147.9 259 39.4
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.4e-33 147.5 124 56.5
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 7.0e-31 139.8 123 52.8
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 5.6e-28 130.2 252 34.9
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 7.3e-28 129.8 134 56.0
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 5.2e-26 123.6 124 54.8
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 3.4e-25 120.9 210 41.9
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 8.3e-16 89.7 88 51.1
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 3.5e-14 84.3 70 57.1
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.0e-14 83.6 229 32.8
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 4.3e-12 77.4 83 45.8
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 1.8e-10 72.0 135 35.6


User provided reference genes

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