Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 0.0e+00 1335.9 725 100.0
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 0.0e+00 1213.4 725 90.8
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 0.0e+00 1171.8 725 87.3
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 0.0e+00 1160.2 727 87.3
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 0.0e+00 1148.7 727 86.7
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 0.0e+00 1140.9 728 85.6
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 0.0e+00 1137.9 728 85.9
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 0.0e+00 1131.3 725 85.4
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 0.0e+00 1128.2 726 85.3
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 0.0e+00 1124.4 727 85.3
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 0.0e+00 1124.4 727 85.3
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 0.0e+00 1119.0 726 84.0
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 7.3e-298 1026.9 729 77.9
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 3.1e-288 995.0 726 77.4
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 2.1e-260 902.5 723 67.1
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 8.8e-259 897.1 723 67.1
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 1.7e-257 892.9 723 66.8
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 2.4e-256 889.0 723 67.4
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 6.9e-256 887.5 723 66.5
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 1.5e-255 886.3 728 66.8
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 3.6e-252 875.2 695 67.9
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 6.3e-249 864.4 724 65.7
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 1.7e-246 856.3 723 64.5
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 2.2e-246 855.9 723 64.9
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 8.5e-246 854.0 724 65.9
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 8.5e-246 854.0 724 65.2
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 3.2e-245 852.0 810 60.4
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 5.2e-243 844.7 725 64.3
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 9.7e-242 840.5 723 64.6
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 2.2e-241 839.3 752 62.2
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 4.8e-241 838.2 723 63.9
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 1.8e-240 836.3 727 63.8
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.8e-240 836.3 723 63.2
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 7.7e-239 830.9 724 63.4
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 8.5e-238 827.4 727 64.2
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 7.2e-237 824.3 727 63.3
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 7.2e-237 824.3 731 64.2
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 1.2e-236 823.5 724 64.5
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 1.4e-235 820.1 727 63.3
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 3.0e-235 818.9 729 63.0
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 3.4e-234 815.5 729 63.1
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 5.7e-234 814.7 724 63.1
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 2.2e-233 812.8 749 62.6
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.4e-232 810.1 725 62.2
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.4e-232 810.1 727 62.9
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 2.0e-231 806.2 729 61.5
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 5.9e-231 804.7 723 62.5
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 1.3e-230 803.5 727 63.1
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.7e-230 803.1 724 62.0
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 2.9e-230 802.4 732 62.2
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 5.0e-230 801.6 724 61.9
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 1.1e-229 800.4 728 61.1
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 4.2e-229 798.5 724 61.0
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.8e-228 795.8 723 60.9
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 6.1e-228 794.7 706 62.3
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 1.8e-227 793.1 725 61.9
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 2.3e-227 792.7 669 66.5
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 8.9e-227 790.8 725 60.3
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 9.8e-226 787.3 725 61.1
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 4.9e-225 785.0 727 61.5
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 1.8e-224 783.1 724 60.5
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 3.5e-223 778.9 723 60.3
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 1.0e-222 777.3 724 60.1
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 1.3e-222 776.9 723 60.4
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 5.0e-222 775.0 715 61.1
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 1.0e-219 767.3 737 60.4
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 9.8e-218 760.8 727 58.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 3.7e-217 758.8 712 60.5
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 3.2e-216 755.7 728 58.9
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 7.0e-216 754.6 795 56.9
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 2.7e-215 752.7 812 54.9
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.1e-212 743.0 737 56.6
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 2.8e-212 742.7 700 59.4
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 9.8e-210 734.2 697 59.7
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.5e-207 725.7 745 56.5
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 6.2e-204 714.9 725 56.7
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 3.4e-202 709.1 725 57.8
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.7e-201 706.8 723 56.7
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 5.4e-200 701.8 730 57.7
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.2e-199 700.7 663 60.9
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 1.1e-197 694.1 698 55.6
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 8.1e-196 688.0 727 56.4
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 9.9e-194 681.0 670 57.0
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 3.8e-193 679.1 775 51.7
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.8e-193 679.1 725 54.2
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.1e-192 677.6 699 54.9
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 5.1e-182 642.1 739 51.3
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 7.4e-173 611.7 743 49.3
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 2.7e-167 593.2 671 52.5
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 1.0e-161 574.7 597 58.0
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 2.2e-161 573.5 725 48.7
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 4.8e-140 502.7 575 51.3
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 4.1e-139 499.6 357 74.2
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 4.5e-130 469.5 555 51.2
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 1.5e-128 464.5 426 61.3
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 5.2e-126 456.1 587 50.3
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 5.7e-125 452.6 361 67.3
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 6.8e-118 429.1 298 74.8
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 4.4e-117 426.4 427 58.8
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 8.6e-105 385.6 265 75.5
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 6.4e-100 369.4 378 57.7
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 1.6e-87 328.2 698 34.4
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.7e-81 308.1 343 56.0
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 2.5e-80 304.3 733 31.5
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 6.2e-79 299.7 372 51.6
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 6.2e-79 299.7 443 43.8
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 2.6e-77 294.3 504 42.3
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 2.2e-76 291.2 664 30.9
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 2.0e-69 268.1 271 56.1
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 4.8e-63 246.9 707 28.9
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 8.1e-63 246.1 708 28.0
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 8.4e-60 236.1 437 40.7
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.6e-29 134.8 136 55.1
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.7e-26 124.0 82 69.5
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 8.8e-25 119.8 502 24.5
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 5.7e-24 117.1 144 48.6
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 3.1e-22 111.3 190 40.5
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.1e-22 110.9 124 47.6
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 5.0e-20 104.0 97 55.7
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 6.5e-20 103.6 136 45.6
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 5.2e-17 94.0 153 39.2
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.4e-16 90.1 76 68.4
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 9.7e-16 89.7 103 51.5
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 8.2e-15 86.7 165 35.2
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 3.1e-14 84.7 115 40.9
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 1.7e-12 79.0 55 72.7
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 2.9e-12 78.2 70 50.0
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 5.5e-11 73.9 116 40.5
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 1.8e-09 68.9 105 43.8
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 4.0e-09 67.8 79 46.8
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.8e-06 58.9 41 70.7


User provided reference genes

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