Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1587.0 833 100.0
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1534.2 837 96.3
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1530.0 837 95.9
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1529.6 837 96.1
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1526.1 837 96.1
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1523.5 837 95.5
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1516.5 837 95.5
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1508.4 833 95.1
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1505.0 835 95.1
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1504.2 834 95.0
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1503.8 834 95.0
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1501.1 835 95.1
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1501.1 837 94.6
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1496.1 838 94.4
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1478.0 837 92.6
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1446.0 838 89.4
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1307.7 841 79.9
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1302.3 838 80.7
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1302.0 837 80.5
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1301.6 837 80.4
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1300.0 841 80.1
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1297.3 840 79.4
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1288.5 838 79.8
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1283.9 840 78.8
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1280.8 840 78.8
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1280.0 840 78.5
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1277.3 841 78.6
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1276.5 836 78.6
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1274.6 839 77.5
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1274.2 841 78.5
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1273.8 840 79.0
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1273.5 840 77.6
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1271.5 837 79.1
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1271.5 841 78.1
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1266.9 841 79.0
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1266.9 837 78.9
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1265.4 837 78.3
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1262.7 839 78.1
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1262.7 837 78.4
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1261.5 837 77.8
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1261.1 841 77.5
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1256.9 838 76.7
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1256.1 839 77.7
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1255.0 838 77.1
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1254.2 840 76.9
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1253.4 838 76.8
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1248.4 837 77.2
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1243.4 837 76.7
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1242.3 859 75.9
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1241.9 837 76.9
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1241.9 841 76.8
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1240.3 831 77.3
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1240.3 838 76.7
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1235.7 837 76.5
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1234.6 837 76.8
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1231.5 837 76.5
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1229.5 837 76.6
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1226.1 929 70.5
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1224.5 838 75.7
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1224.2 840 75.5
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1223.8 837 75.6
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1221.8 848 74.6
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1221.1 840 75.5
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1211.4 843 74.5
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1206.8 840 75.1
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 833 75.9
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1205.3 841 73.7
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1201.4 839 73.4
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1201.4 839 73.3
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1199.5 838 73.6
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1195.3 837 74.1
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1194.9 836 73.9
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1193.7 841 74.0
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1186.8 841 72.7
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1186.8 837 73.7
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1186.4 850 73.2
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1182.9 850 73.2
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1178.7 837 72.5
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1176.8 836 73.4
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1175.2 840 72.4
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1170.2 858 71.3
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1166.8 858 71.1
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1166.4 841 71.5
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1164.4 838 70.5
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1164.4 834 71.8
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1159.4 807 74.6
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1154.4 839 70.8
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1149.8 840 71.0
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1142.9 858 70.3
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1132.9 840 70.8
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1129.0 858 71.4
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1111.3 745 76.5
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1104.0 839 70.0
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1103.6 725 79.4
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1090.1 1002 60.4
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 9.0e-308 1060.1 841 65.5
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 2.8e-293 1011.9 835 66.5
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 8.7e-287 990.3 717 69.6
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 2.5e-286 988.8 682 74.9
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 2.2e-282 975.7 543 94.7
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 2.1e-272 942.6 621 82.3
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 6.3e-253 877.9 855 55.3
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 6.5e-250 867.8 852 54.7
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 2.1e-232 809.7 833 52.6
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.3e-229 800.4 518 78.0
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 7.1e-220 768.1 749 55.9
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.1e-215 752.7 546 71.1
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 6.0e-211 738.4 612 63.4
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 5.8e-206 721.8 510 74.5
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 1.2e-198 697.6 903 45.8
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 6.2e-184 648.7 426 80.5
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.8e-183 647.1 557 63.4
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 2.9e-181 639.8 444 77.3
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.2e-164 583.2 439 70.2
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 6.7e-154 548.9 343 80.8
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 2.1e-147 527.3 400 69.0
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 9.7e-145 518.5 293 94.2
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 5.3e-143 512.7 378 70.6
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.8e-122 444.5 386 63.5
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 8.9e-122 442.2 235 95.7
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 4.4e-121 439.9 235 94.9
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 7.8e-118 429.1 337 64.1
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.1e-106 392.1 427 53.4
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 3.1e-98 364.0 856 31.1
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 8.9e-98 362.5 257 72.0
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 6.4e-80 303.1 211 69.7
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.8e-77 295.0 856 27.9
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.3e-64 252.3 269 54.6
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.5e-63 248.1 230 63.9
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.9e-61 240.7 290 49.3
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.1e-60 239.2 200 64.0
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 4.1e-58 230.7 122 92.6
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 1.5e-57 228.8 176 69.3
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 6.9e-50 203.4 144 77.1
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 6.5e-48 196.8 130 72.3
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 6.1e-46 190.3 104 93.3
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 3.9e-45 187.6 104 92.3
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 3.7e-43 181.0 127 75.6
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 8.2e-43 179.9 96 91.7
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 1.1e-42 179.5 96 93.8
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 2.1e-38 165.2 105 82.9
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 4.8e-35 154.1 97 76.3
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 8.2e-35 153.3 95 78.9
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 8.5e-32 143.3 95 71.6
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 6.7e-29 133.7 95 70.5
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 1.2e-28 132.9 230 40.9
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 3.7e-27 127.9 130 52.3
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 1.9e-23 115.5 87 72.4
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 1.8e-21 109.0 145 45.5
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 4.0e-21 107.8 212 37.7
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 4.0e-21 107.8 227 35.7
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.2e-20 106.3 82 68.3
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 1.2e-20 106.3 220 35.0
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.4e-18 99.4 70 68.6
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.1e-18 98.2 99 45.5
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 6.6e-16 90.5 72 65.3
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 4.2e-15 87.8 78 65.4
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 4.1e-10 71.2 58 63.8
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 2.0e-09 68.9 158 33.5
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 2.9e-08 65.1 67 50.7
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 8.0e-06 57.0 54 53.7


User provided reference genes

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