Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 0.0e+00 1835.8 952 100.0
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 0.0e+00 1524.6 952 83.7
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 0.0e+00 1508.0 955 83.2
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1479.5 953 81.7
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 0.0e+00 1469.5 952 81.4
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1468.8 954 80.8
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1468.8 954 80.8
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 0.0e+00 1463.0 954 81.3
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1455.7 952 81.0
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1453.3 952 81.0
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 0.0e+00 1451.8 956 81.0
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 0.0e+00 1437.9 952 79.9
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 0.0e+00 1422.9 959 79.1
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 0.0e+00 1260.7 960 71.2
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 2.5e-285 985.7 976 57.7
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 1.9e-261 906.4 568 81.3
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 2.1e-252 876.3 955 57.0
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 8.7e-198 694.9 1012 43.6
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 2.0e-194 683.7 1035 44.1
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 7.4e-189 665.2 1006 43.4
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.8e-188 663.3 1007 42.9
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 8.1e-188 661.8 1027 43.6
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 7.6e-186 655.2 1014 42.5
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 1.0e-185 654.8 1013 43.2
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 2.7e-183 646.7 1069 40.6
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 3.9e-182 642.9 1009 42.7
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 9.6e-181 638.3 1007 42.2
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.3e-180 637.9 981 42.7
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 6.9e-179 632.1 1013 42.3
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.9e-176 624.0 1016 41.5
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 4.2e-176 622.9 1024 40.7
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 2.8e-172 610.1 1011 40.4
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 7.7e-170 602.1 1006 41.2
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 3.2e-168 596.7 989 41.7
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.7e-164 584.3 1005 40.7
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 2.8e-164 583.6 1031 40.9
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.8e-163 580.9 1018 40.1
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 1.7e-156 557.8 1012 39.0
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.1e-155 555.1 1017 39.1
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.1e-155 553.1 1012 39.1
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-154 551.6 1019 38.6
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.7e-153 547.7 1016 38.6
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 2.9e-153 547.0 1074 38.4
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 6.5e-153 545.8 1030 40.0
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 8.5e-153 545.4 1070 37.9
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 2.7e-151 540.4 990 39.7
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 4.4e-149 533.1 1025 38.1
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 8.2e-148 528.9 892 40.2
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 7.0e-147 525.8 1010 39.6
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 2.0e-146 524.2 1014 38.7
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 4.5e-146 523.1 1005 38.4
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 4.5e-146 523.1 1024 39.3
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.1e-144 518.5 1015 38.2
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 3.2e-144 516.9 1003 38.6
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 3.4e-141 506.9 1011 37.6
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 9.8e-141 505.4 1013 37.8
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 8.3e-140 502.3 1008 38.2
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 2.7e-138 497.3 1001 37.7
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 3.2e-136 490.3 976 37.9
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.1e-135 487.6 998 37.1
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.2e-133 481.9 1013 36.5
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 7.5e-133 479.2 859 38.9
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.1e-131 475.3 827 38.6
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.8e-131 474.6 1024 37.2
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 2.7e-130 470.7 879 38.0
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.3e-129 468.4 1053 35.7
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.3e-129 467.6 967 37.1
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 9.5e-128 462.2 983 36.0
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.2e-127 461.8 794 40.3
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 3.6e-127 460.3 317 78.2
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 3.6e-127 460.3 1001 36.6
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 4.7e-127 459.9 1017 34.8
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.0e-126 458.8 1021 35.3
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.0e-126 458.8 1012 36.7
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 8.9e-126 455.7 1003 36.0
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 3.4e-125 453.8 993 36.6
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 7.5e-125 452.6 991 35.6
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 9.8e-125 452.2 984 35.9
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 9.8e-125 452.2 984 35.9
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 2.9e-124 450.7 1025 35.2
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 4.6e-122 443.4 782 39.6
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 5.0e-121 439.9 989 35.8
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 2.8e-119 434.1 1002 35.4
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 8.0e-119 432.6 1017 35.0
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 2.3e-118 431.0 1016 34.8
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 2.3e-118 431.0 1000 35.0
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.5e-117 428.3 865 38.6
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 5.8e-117 426.4 1027 35.7
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 3.7e-116 423.7 992 35.5
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 8.3e-116 422.5 989 35.4
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.9e-115 421.4 992 35.2
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 4.1e-115 420.2 993 35.3
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 4.6e-114 416.8 1007 34.7
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 3.5e-106 390.6 885 33.7
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 9.5e-104 382.5 934 33.6
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.0e-97 362.5 934 33.3
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 3.0e-97 360.9 1046 32.7
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 1.9e-91 341.7 667 37.8
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 5.1e-89 333.6 1011 30.4
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 4.4e-85 320.5 1004 30.3
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 1.3e-84 318.9 875 32.0
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 4.2e-83 313.9 1011 30.7
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 2.1e-82 311.6 1006 30.6
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 7.9e-82 309.7 918 30.8
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.0e-81 309.3 625 35.4
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 9.9e-77 292.7 472 40.7
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 3.4e-69 267.7 489 40.1
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 1.3e-65 255.8 611 35.7
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.1e-64 252.7 488 38.3
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.0e-61 241.9 1088 25.7
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.9e-59 235.3 460 40.4
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 6.7e-57 226.9 929 28.0
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 1.3e-55 222.6 319 42.6
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 3.7e-55 221.1 380 41.3
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 1.6e-50 205.7 167 67.7
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.9e-49 201.1 384 39.6
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.7e-42 178.3 254 46.5
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.4e-33 149.4 300 39.0
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 2.6e-32 145.2 358 34.9
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 2.6e-32 145.2 256 42.6
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 4.1e-30 137.9 316 33.9
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 3.2e-19 101.7 1023 22.6
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 9.2e-14 83.6 174 37.4
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.1e-11 76.6 161 37.3
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 8.9e-09 67.0 80 55.0
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 1.2e-08 66.6 253 27.3
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 1.4e-06 59.7 181 30.4
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 1.4e-06 59.7 82 47.6


User provided reference genes

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