Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 2146.3 1124 100.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 2067.4 1124 95.5
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 2056.6 1124 94.5
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 2049.6 1124 93.6
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 2044.6 1124 93.8
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 2022.3 1124 93.3
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 2014.6 1128 92.9
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 2010.7 1128 92.6
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2008.8 1128 92.5
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2003.4 1128 92.3
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1979.9 1124 91.7
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1962.6 1139 89.5
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1950.6 1124 89.8
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1927.5 1125 89.2
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1926.4 1125 89.2
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1920.2 1124 89.0
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1910.6 1124 88.4
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1857.8 1129 85.4
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1847.0 1142 86.1
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1662.5 1142 74.8
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1645.6 1131 74.2
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1644.4 1133 75.0
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1641.3 1150 73.3
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1641.3 1152 73.4
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1639.0 1146 73.4
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1637.9 1128 74.6
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1632.8 1139 73.6
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1631.3 1133 72.9
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1627.5 1141 73.5
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1625.5 1143 73.2
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1620.1 1135 73.0
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1617.4 1136 72.6
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1607.4 1130 71.9
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1603.6 1132 72.4
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1601.3 1132 72.2
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1600.9 1129 72.5
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1600.1 1131 71.7
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1598.2 1132 71.8
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1597.0 1132 72.2
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1596.3 1128 71.8
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1592.0 1145 70.8
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1591.2 1184 69.5
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1590.9 1127 71.5
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1590.1 1128 72.3
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1588.5 1135 71.0
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1587.8 1129 71.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1581.2 1140 70.8
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1579.7 1141 70.9
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1137 71.0
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1577.4 1130 71.9
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1570.4 1129 70.4
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1570.1 1130 71.7
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1562.4 1132 70.5
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1560.8 1132 70.0
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1558.5 1133 70.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1553.1 1135 68.2
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1552.7 1138 69.5
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1552.3 1136 68.9
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1550.8 1136 68.9
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1548.5 1139 70.3
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1542.3 1105 71.0
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1535.4 1136 68.8
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1533.9 1128 69.1
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1533.1 1138 68.9
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1530.0 1126 69.4
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1526.5 1139 68.1
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1521.9 1130 68.7
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1521.1 1137 68.2
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1520.0 1124 68.1
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1520.0 1127 69.1
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1511.5 1137 67.4
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1508.4 1140 67.2
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1507.7 1143 67.4
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1498.0 1012 77.1
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1493.8 1130 68.2
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1492.6 1140 67.1
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1486.5 1135 67.0
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1484.5 1134 67.5
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1484.2 1139 67.2
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1480.7 1127 67.4
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1480.7 1135 66.9
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1473.4 1030 71.7
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1471.1 1130 66.5
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1466.1 1126 66.3
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1461.0 1141 65.6
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1457.6 1105 67.6
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1456.8 1128 66.1
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1450.3 1079 67.9
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1449.5 1134 66.0
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1443.7 1129 65.0
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1440.2 1148 64.5
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1440.2 1148 64.5
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1422.1 1072 68.5
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1408.7 1078 66.5
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1401.7 1037 68.0
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1357.4 926 73.7
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1339.3 1132 62.6
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1324.7 1127 61.5
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1323.5 929 70.8
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1314.3 1072 62.0
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1313.1 1042 64.6
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1271.1 1109 58.2
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1253.8 1102 57.7
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1220.7 895 68.3
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1198.3 822 74.8
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1188.3 888 67.7
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1117.4 929 62.8
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1079.3 788 69.9
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 6.4e-309 1064.3 1078 50.7
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 3.7e-304 1048.5 1109 49.5
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 6.9e-295 1017.7 1075 48.7
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.1e-281 973.8 1082 47.0
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 2.6e-273 946.0 674 70.0
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.1e-267 926.4 760 62.9
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 4.9e-240 835.5 601 70.7
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.4e-239 833.2 929 52.3
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 2.0e-217 760.4 1113 40.2
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 4.0e-210 736.1 614 60.4
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 2.2e-155 554.3 366 73.8
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 4.5e-145 520.0 422 66.1
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 8.5e-136 489.2 430 62.1
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.9e-106 391.7 359 56.0
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 7.8e-105 386.3 1209 27.7
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.6e-97 362.1 317 61.2
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 7.3e-87 326.6 1150 27.0
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.5e-79 301.6 332 55.4
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.1e-71 276.2 366 43.4
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.3e-70 272.7 316 50.9
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 3.5e-65 254.6 333 47.1
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.1e-58 233.0 319 47.0
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.8e-32 146.0 150 58.7
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 2.0e-31 142.5 106 72.6
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 9.4e-26 123.6 110 67.3
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-25 122.9 86 76.7
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-25 122.9 70 77.1
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 3.6e-25 121.7 667 21.7
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 6.1e-25 120.9 68 77.9
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 5.2e-24 117.9 86 74.4
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 4.4e-07 61.6 73 45.2


User provided reference genes

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