Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012207m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 5.2e-102 374.4 191 100.0
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.1e-70 270.4 204 74.5
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 5.3e-70 268.1 204 74.0
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 9.0e-70 267.3 204 74.0
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 2.0e-69 266.2 204 73.5
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 2.6e-69 265.8 204 73.5
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.4e-69 265.4 204 73.0
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 5.8e-69 264.6 215 70.7
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 5.8e-69 264.6 215 70.7
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 5.8e-69 264.6 215 70.7
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 5.8e-69 264.6 215 70.7
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 5.8e-69 264.6 215 70.7
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 1.7e-68 263.1 204 73.0
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 1.9e-67 259.6 204 72.5
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 1.9e-67 259.6 204 72.5
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.9e-67 259.6 204 72.5
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 9.3e-67 257.3 204 72.1
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 4.6e-66 255.0 205 72.2
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 4.6e-66 255.0 205 72.2
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 1.8e-65 253.1 234 65.0
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 1.1e-62 243.8 205 68.3
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.4e-62 243.4 215 64.7
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.4e-62 243.4 215 64.7
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 9.0e-62 240.7 215 63.7
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 2.6e-61 239.2 204 65.7
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 8.4e-60 234.2 202 65.3
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.4e-59 233.4 215 62.3
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.4e-59 233.4 215 62.3
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 2.4e-59 232.6 215 60.0
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 5.5e-59 231.5 218 60.6
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 5.5e-59 231.5 202 64.4
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 7.1e-59 231.1 204 64.2
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 7.1e-59 231.1 215 60.9
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 9.3e-59 230.7 215 60.9
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 1.2e-58 230.3 215 61.9
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.6e-58 229.9 218 61.5
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.6e-58 229.9 215 60.5
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 2.1e-58 229.6 210 62.4
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 2.7e-58 229.2 215 60.0
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 2.7e-58 229.2 215 59.5
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.5e-58 228.8 204 63.2
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.6e-58 228.4 203 63.1
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.6e-58 228.4 203 63.1
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 6.0e-58 228.0 204 63.2
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 6.0e-58 228.0 204 63.2
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 7.9e-58 227.6 202 62.9
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 7.9e-58 227.6 202 62.9
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 1.0e-57 227.3 215 60.0
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 1.0e-57 227.3 215 60.0
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 1.0e-57 227.3 202 62.9
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.0e-57 227.3 204 62.7
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 1.0e-57 227.3 204 63.2
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.3e-57 226.9 204 61.8
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 1.8e-57 226.5 204 62.7
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.8e-57 226.5 204 61.8
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 1.8e-57 226.5 215 60.9
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 2.3e-57 226.1 215 60.0
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 3.9e-57 225.3 205 63.4
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 3.9e-57 225.3 172 69.8
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 3.9e-57 225.3 204 62.3
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 3.9e-57 225.3 204 62.3
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 5.1e-57 224.9 204 62.3
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.1e-56 223.8 204 62.7
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 1.1e-56 223.8 215 59.5
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.1e-56 223.8 202 61.9
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 1.5e-56 223.4 198 63.1
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 1.5e-56 223.4 216 60.2
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.9e-56 223.0 205 60.5
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.9e-56 223.0 201 61.7
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 1.9e-56 223.0 204 61.8
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 3.3e-56 222.2 215 58.1
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 3.3e-56 222.2 204 62.3
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 3.3e-56 222.2 204 61.3
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 3.3e-56 222.2 216 59.7
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 7.4e-56 221.1 203 62.1
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 7.4e-56 221.1 214 58.9
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 9.6e-56 220.7 202 62.4
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 9.6e-56 220.7 216 59.7
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.3e-55 220.3 215 59.5
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.3e-55 220.3 215 59.5
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 1.6e-55 219.9 224 56.7
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 2.1e-55 219.5 205 61.0
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 3.7e-55 218.8 204 60.8
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 4.8e-55 218.4 204 61.3
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.4e-54 216.9 205 60.5
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 2.4e-54 216.1 202 60.4
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 2.4e-54 216.1 242 55.0
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 4.0e-54 215.3 204 60.3
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 5.3e-54 214.9 219 59.4
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 9.0e-54 214.2 214 57.9
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 9.0e-54 214.2 204 60.3
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 1.5e-53 213.4 204 59.3
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 3.4e-53 212.2 204 59.3
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 3.4e-53 212.2 214 57.5
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 3.4e-53 212.2 202 59.4
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 4.5e-53 211.8 204 59.3
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 5.8e-53 211.5 204 58.3
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 1.3e-52 210.3 205 60.0
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 1.7e-52 209.9 213 58.2
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 1.7e-52 209.9 213 58.2
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 2.9e-52 209.1 201 58.7
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 3.8e-52 208.8 204 58.8
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.1e-51 207.2 201 57.7
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.4e-51 206.8 215 56.3
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.4e-51 206.8 215 56.3
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 1.9e-51 206.5 217 55.3
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 1.9e-51 206.5 203 59.1
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 2.5e-51 206.1 202 58.4
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 2.5e-51 206.1 204 55.4
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 3.2e-51 205.7 214 55.6
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 3.2e-51 205.7 215 53.0
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 3.2e-51 205.7 266 48.5
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 9.3e-51 204.1 201 57.2
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 1.2e-50 203.8 202 58.4
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 1.6e-50 203.4 205 58.5
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.6e-50 203.4 206 56.8
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 2.7e-50 202.6 215 54.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.6e-50 201.8 206 56.3
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 4.6e-50 201.8 230 51.7
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 1.1e-48 197.2 204 57.4
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 3.4e-45 185.7 204 55.9
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 3.0e-41 172.6 206 50.0
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 1.9e-40 169.9 206 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 2.2e-39 166.4 202 47.5
MBI03_g18482_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D003878 1.8e-38 163.3 113 73.5
Haze_10318 Corylus avellana HOM05D002370 ORTHO05D003878 5.9e-37 158.3 152 60.5
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 3.2e-35 152.5 202 45.5
MBI03_g18483_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 2.0e-29 133.3 92 73.9
MBI08_g05568_MAGBIO Magnolia biondii HOM05D001673 ORTHO05D012924 1.0e-28 131.0 100 68.0
MBI04_g33444_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 1.3e-28 130.6 90 74.4
MBI18_g33401_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 3.2e-27 125.9 91 70.3
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 9.4e-27 124.4 147 46.9
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 3.6e-26 122.5 139 50.4
MBI04_g11121_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D015148 6.7e-25 118.2 90 65.6
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 1.1e-24 117.5 178 39.3
MBI19_g14019_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D003878 1.1e-19 100.9 70 71.4
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 2.5e-19 99.8 133 41.4
MBI04_g22054_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 1.6e-18 97.1 83 60.2
QL06p036987 Quercus lobata HOM05D002370 ORTHO05D003878 3.6e-18 95.9 155 43.2
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 3.7e-15 85.9 136 35.3
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 1.8e-14 83.6 180 39.4
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 1.2e-13 80.9 172 30.2
QL05p028983 Quercus lobata HOM05D002370 ORTHO05D003878 2.2e-12 76.6 107 45.8
MBI11_g41494_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D012924 5.5e-11 72.0 46 78.3
MBI08_g24353_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 4.0e-09 65.9 53 62.3
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 8.3e-07 58.2 43 62.8
MBI19_g03781_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 1.1e-06 57.8 42 61.9


User provided reference genes

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