Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012139m.g Eutrema salsugineum HOM05D000135 ORTHO05D011359 1.3e-53 213.0 121 100.0
Sp1g33430 Schrenkiella parvula HOM05D000135 ORTHO05D011359 3.8e-34 148.3 118 79.7
A06p03870 Brassica napus HOM05D000135 ORTHO05D011359 1.6e-32 142.9 111 66.7
BraA06t23595Z Brassica rapa HOM05D000135 ORTHO05D011359 1.6e-32 142.9 111 66.7
BcaC08g43136 Brassica carinata HOM05D000135 ORTHO05D011359 2.1e-32 142.5 109 79.8
C06p04130 Brassica napus HOM05D000135 ORTHO05D011359 2.1e-32 142.5 109 79.8
BcaB02g11072 Brassica carinata HOM05D000135 ORTHO05D011359 6.1e-32 141.0 110 78.2
BolC6t35541H Brassica oleracea HOM05D000135 ORTHO05D011359 3.0e-31 138.7 109 78.0
BcaB07g33677 Brassica carinata HOM05D000135 ORTHO05D011359 2.6e-30 135.6 111 73.9
BraA05t20974Z Brassica rapa HOM05D000135 ORTHO05D011359 2.6e-30 135.6 110 78.2
AL3G13080 Arabidopsis lyrata HOM05D000227 ORTHO05D011359 2.9e-29 132.1 111 60.4
Thhalv10022182m.g Eutrema salsugineum HOM05D000135 ORTHO05D011359 6.4e-29 131.0 111 73.9
Carub.0003s0255 Capsella rubella HOM05D000135 ORTHO05D011359 8.3e-29 130.6 111 60.4
AT3G03410 Arabidopsis thaliana HOM05D000135 ORTHO05D011359 4.1e-28 128.3 111 60.4
A05p20660 Brassica napus HOM05D000135 ORTHO05D011359 5.0e-26 121.3 108 71.3
BcaC05g27517 Brassica carinata HOM05D000135 ORTHO05D011359 2.8e-24 115.5 111 71.2
Sp3g02410 Schrenkiella parvula HOM05D000227 ORTHO05D011359 5.8e-22 107.8 114 57.0
C05p34910 Brassica napus HOM05D000135 ORTHO05D011359 1.3e-18 96.7 67 76.1
BolC5t32216H Brassica oleracea HOM05D000135 ORTHO05D011359 1.3e-18 96.7 67 76.1
Carub.0004s1794 Capsella rubella HOM05D000135 ORTHO05D000203 8.6e-18 94.0 121 43.0
BcaC05g30534 Brassica carinata HOM05D000135 ORTHO05D011359 1.1e-17 93.6 112 44.6
AL4G32280 Arabidopsis lyrata HOM05D000135 ORTHO05D011359 9.5e-17 90.5 122 52.5
C05p63420 Brassica napus HOM05D000227 ORTHO05D011359 9.5e-17 90.5 112 53.6
CARHR195730 Cardamine hirsuta HOM05D000135 ORTHO05D000203 2.1e-16 89.4 122 41.0
CARHR077430 Cardamine hirsuta HOM05D000135 ORTHO05D011359 2.8e-16 89.0 102 55.9
Carub.0006s1570 Capsella rubella HOM05D000135 ORTHO05D011359 4.7e-16 88.2 122 48.4
AL6G28550 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 1.1e-15 87.0 122 49.2
BcaC05g30277 Brassica carinata HOM05D000135 ORTHO05D011359 1.1e-15 87.0 112 41.1
AT5G17470 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 4.0e-15 85.1 122 43.4
Carub.0004s0480 Capsella rubella HOM05D000135 ORTHO05D000203 6.8e-15 84.3 122 39.3
Sp3g02400 Schrenkiella parvula HOM05D000135 ORTHO05D000203 6.8e-15 84.3 122 38.5
BcaC05g30276 Brassica carinata HOM05D000135 ORTHO05D011359 8.9e-15 84.0 112 52.7
AL3G13072 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 1.5e-14 83.2 122 40.2
CARHR077420 Cardamine hirsuta HOM05D000135 ORTHO05D000203 5.8e-14 81.3 122 38.5
AT2G36180 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 7.5e-14 80.9 119 40.3
A03p01440 Brassica napus HOM05D000135 ORTHO05D000203 7.5e-14 80.9 120 38.3
Thhalv10022417m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 7.5e-14 80.9 122 38.5
BcaB01g05778 Brassica carinata HOM05D000135 ORTHO05D000203 1.3e-13 80.1 121 38.0
BcaB01g05781 Brassica carinata HOM05D000135 ORTHO05D000203 1.3e-13 80.1 118 39.8
C03p01770 Brassica napus HOM05D000135 ORTHO05D000203 1.3e-13 80.1 121 38.0
BolC3t12732H Brassica oleracea HOM05D000135 ORTHO05D000203 1.3e-13 80.1 121 38.0
C06p04190 Brassica napus HOM05D000135 ORTHO05D011359 1.7e-13 79.7 51 78.4
AT3G03400 Arabidopsis thaliana HOM05D000135 ORTHO05D011359 2.2e-13 79.3 122 37.7
BraA03t09523Z Brassica rapa HOM05D000135 ORTHO05D000203 3.7e-13 78.6 122 36.9
BraA03t12154Z Brassica rapa HOM05D017453 ORTHO05D018582 1.7e-10 69.7 59 52.5
BcaC09g47744 Brassica carinata HOM05D000135 ORTHO05D011359 8.6e-10 67.4 65 46.2
BNapus_Darmor_BZH_scaffold_162p00140 Brassica napus HOM05D000135 ORTHO05D011359 8.6e-10 67.4 65 46.2
BolC1t05833H Brassica oleracea HOM05D000135 ORTHO05D011359 8.6e-10 67.4 65 46.2
CARHR058370 Cardamine hirsuta HOM05D000135 ORTHO05D000203 1.1e-09 67.0 133 30.1
SGA_v2.0_scaffold5G02968 Striga asiatica HOM05D000135 ORTHO05D000203 1.1e-09 67.0 121 30.6
CARHR215040 Cardamine hirsuta HOM05D000135 ORTHO05D000203 1.5e-09 66.6 121 31.4
AL7G46640 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 1.9e-09 66.2 114 33.3
Carub.0007s3293 Capsella rubella HOM05D000135 ORTHO05D000203 3.3e-09 65.5 124 30.6
TWI77G0496 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 3.3e-09 65.5 121 34.7
Oeu046172.1 Olea europaea HOM05D000135 ORTHO05D000203 4.3e-09 65.1 118 33.1
DCAR_010200 Daucus carota HOM05D000135 ORTHO05D000203 9.5e-09 63.9 116 34.5
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 9.5e-09 63.9 118 37.3
BcaB03g15271 Brassica carinata HOM05D000135 ORTHO05D000203 1.2e-08 63.5 107 33.6
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 1.2e-08 63.5 116 42.2
THA.LOC104822372 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 2.8e-08 62.4 127 29.9
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 3.6e-08 62.0 116 44.8
Lj9P420T29 Lonicera japonica HOM05D000135 ORTHO05D000203 8.1e-08 60.8 127 29.9
AT5G37770 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 1.4e-07 60.1 114 34.2
MSTRG.4573 Avicennia marina HOM05D000135 ORTHO05D000203 1.8e-07 59.7 120 28.3
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 2.3e-07 59.3 116 44.8
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 2.3e-07 59.3 124 32.3
Phvul.003G019600 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 2.3e-07 59.3 124 29.8
PGSC0003DMG400010410 Solanum tuberosum HOM05D000135 ORTHO05D000203 2.3e-07 59.3 124 29.0
ECA232G2608 Erigeron canadensis HOM05D000135 ORTHO05D000203 3.1e-07 58.9 132 29.5
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 3.1e-07 58.9 116 39.7
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 4.0e-07 58.5 58 48.3
VMungo1215G3169 Vigna mungo HOM05D000135 ORTHO05D000203 4.0e-07 58.5 124 26.6
CsaV3_2G016890 Cucumis sativus L. HOM05D000135 ORTHO05D000203 5.2e-07 58.2 62 51.6
Aa31LG9G17390 Aethionema arabicum HOM05D000135 ORTHO05D000203 6.8e-07 57.8 61 44.3
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 6.8e-07 57.8 112 31.2
Medtr5g017540 Medicago truncatula HOM05D000135 ORTHO05D000203 6.8e-07 57.8 60 46.7
Nitab4.5_0000922g0050 Nicotiana tabacum HOM05D000135 ORTHO05D000203 6.8e-07 57.8 117 30.8
Nitab4.5_0024537g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 6.8e-07 57.8 117 29.9
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 6.8e-07 57.8 56 50.0
TWI53G1610 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 6.8e-07 57.8 115 31.3
AUR62023178 Chenopodium quinoa HOM05D000135 ORTHO05D000203 8.9e-07 57.4 115 30.4
Thhalv10019556m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 8.9e-07 57.4 61 42.6
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.2e-06 57.0 58 46.6
ECA233G3872 Erigeron canadensis HOM05D000017 ORTHO05D000013 1.2e-06 57.0 117 29.1
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 1.2e-06 57.0 116 44.8
MELO3C020900.2 Cucumis melo HOM05D000135 ORTHO05D000203 1.5e-06 56.6 62 50.0
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 1.5e-06 56.6 61 50.8
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 1.5e-06 56.6 61 50.8
BcaC02g08883 Brassica carinata HOM05D000135 ORTHO05D000203 2.0e-06 56.2 120 35.0
C04p49500 Brassica napus HOM05D000135 ORTHO05D000203 2.0e-06 56.2 120 35.0
BolC4t26538H Brassica oleracea HOM05D000135 ORTHO05D000203 2.0e-06 56.2 120 35.0
CAN.G1067.4 Capsicum annuum HOM05D000135 ORTHO05D000203 2.0e-06 56.2 125 27.2
CDE11G0709 Ceratophyllum demersum HOM05D000135 ORTHO05D000203 2.0e-06 56.2 117 29.1
THA.LOC104805610 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 2.0e-06 56.2 139 28.1
CSS0018159 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 2.6e-06 55.8 126 30.2
CiPaw.01G193900 Carya illinoinensis HOM05D000227 ORTHO05D000451 2.6e-06 55.8 117 35.9
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 2.6e-06 55.8 115 36.5
Haze_10887 Corylus avellana HOM05D000135 ORTHO05D000203 2.6e-06 55.8 126 28.6
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 2.6e-06 55.8 115 39.1
vmacro23116 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 2.6e-06 55.8 117 29.1
BcaB06g27704 Brassica carinata HOM05D000135 ORTHO05D000203 3.4e-06 55.5 120 35.0
CAN.G749.2 Capsicum annuum HOM05D000227 ORTHO05D000451 3.4e-06 55.5 117 38.5
Lj6g0010911 Lotus japonicus HOM05D000227 ORTHO05D000451 3.4e-06 55.5 117 35.0
Lalb_Chr10g0095751 Lupinus albus HOM05D000135 ORTHO05D000203 3.4e-06 55.5 126 28.6
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 3.4e-06 55.5 60 46.7
Phvul.003G244275 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 3.4e-06 55.5 116 43.1
EL10Ac2g04468 Beta vulgaris HOM05D000135 ORTHO05D000203 4.4e-06 55.1 117 29.1
Hma1.2p1_0283F.1_g113440 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 4.4e-06 55.1 116 27.6
Hma1.2p1_0669F.1_g200160 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 4.4e-06 55.1 121 27.3
Lj2g0017494 Lotus japonicus HOM05D000135 ORTHO05D000203 4.4e-06 55.1 117 26.5
Peaxi162Scf00207g00006 Petunia axillaris HOM05D000135 ORTHO05D000203 4.4e-06 55.1 117 29.1
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 5.8e-06 54.7 56 44.6
Aa31LG5G13910 Aethionema arabicum HOM05D000135 ORTHO05D011359 5.8e-06 54.7 65 47.7
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 5.8e-06 54.7 115 34.8
Eucgr.G01446 Eucalyptus grandis HOM05D000135 ORTHO05D000203 5.8e-06 54.7 115 30.4
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 7.6e-06 54.3 62 38.7
AUR62019110 Chenopodium quinoa HOM05D000135 ORTHO05D000203 7.6e-06 54.3 118 28.0
Hma1.2p1_0897F.1_g234320 Hydrangea macrophylla HOM05D000227 ORTHO05D000451 7.6e-06 54.3 117 28.2
Lsat_1_v5_gn_4_156941 Lactuca sativa HOM05D000135 ORTHO05D000203 7.6e-06 54.3 132 28.0
Prupe.1G023600 Prunus persica HOM05D000227 ORTHO05D000451 7.6e-06 54.3 117 38.5
Sed0008130 Sechium edule HOM05D000135 ORTHO05D000203 7.6e-06 54.3 62 46.8
Ah.16g101220 Amaranthus hybridus HOM05D000135 ORTHO05D000203 9.9e-06 53.9 117 29.9
Manes.09G153600 Manihot esculenta HOM05D000227 ORTHO05D000451 9.9e-06 53.9 117 27.4
VMungo1127G0592 Vigna mungo HOM05D000135 ORTHO05D000203 9.9e-06 53.9 69 34.8


User provided reference genes

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