Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 4.3e-110 401.4 206 100.0
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.5e-88 328.6 215 81.9
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.6e-88 328.2 214 81.3
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 5.6e-86 321.2 211 80.1
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 8.2e-85 317.4 214 77.6
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-84 315.5 214 77.6
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 3.1e-84 315.5 214 77.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.5e-83 313.2 214 77.1
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.5e-83 313.2 214 77.1
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.5e-83 313.2 214 77.1
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.0e-83 312.8 214 76.6
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.6e-83 312.4 214 76.2
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 7.6e-83 310.8 214 76.2
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 7.6e-83 310.8 214 75.7
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.0e-82 310.5 214 76.2
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.2e-82 309.3 211 76.3
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 8.4e-82 307.4 215 76.7
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.4e-81 306.6 214 74.8
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.9e-81 306.2 214 75.2
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-81 306.2 214 75.2
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-81 306.2 214 75.2
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.9e-81 306.2 214 75.2
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.2e-80 303.5 214 77.1
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 5.1e-79 298.1 214 73.8
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 5.7e-78 294.7 215 74.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 5.7e-78 294.7 215 74.0
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 5.7e-78 294.7 215 74.0
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 5.7e-78 294.7 215 74.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 5.7e-78 294.7 215 74.0
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 8.2e-77 290.8 215 73.0
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.2e-75 287.0 205 72.2
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.5e-73 278.1 214 68.7
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 5.2e-55 218.4 217 55.8
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.1e-52 210.7 215 53.5
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 1.8e-52 209.9 206 56.8
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 9.1e-52 207.6 215 53.0
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.6e-51 206.8 214 53.3
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 3.5e-51 205.7 215 52.6
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.0e-50 204.1 215 52.6
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 3.2e-49 199.1 214 52.8
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-48 197.2 215 52.6
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.2e-48 197.2 215 54.0
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 2.7e-48 196.1 214 51.9
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 3.6e-48 195.7 213 54.5
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 3.6e-48 195.7 214 50.9
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.1e-48 194.9 215 51.6
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.0e-47 194.1 216 52.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.8e-47 193.4 216 51.9
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.0e-47 192.6 214 51.9
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 1.2e-46 190.7 218 53.7
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.4e-46 188.7 213 52.1
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 9.7e-46 187.6 214 48.1
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 6.3e-45 184.9 212 46.7
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 2.4e-44 183.0 217 46.5
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.1e-44 182.6 218 48.6
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 4.1e-44 182.2 219 50.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 9.1e-44 181.0 208 51.4
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.2e-43 180.6 209 50.7
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.6e-43 180.3 219 47.9
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 3.5e-43 179.1 219 47.9
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 5.9e-43 178.3 218 48.6
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.0e-42 177.6 245 46.9
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.3e-42 177.2 215 48.4
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 5.0e-42 175.3 208 47.1
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 5.0e-42 175.3 215 47.9
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 6.5e-42 174.9 215 47.9
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 8.5e-42 174.5 215 47.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 8.5e-42 174.5 215 46.5
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 8.5e-42 174.5 220 50.5
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.1e-41 174.1 210 47.6
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.1e-41 174.1 218 47.2
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.5e-41 173.7 208 48.6
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.5e-41 173.7 214 47.2
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-41 173.3 215 47.9
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.9e-41 173.3 218 47.2
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 3.2e-41 172.6 215 46.0
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 3.2e-41 172.6 216 50.0
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 3.2e-41 172.6 216 47.7
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.5e-41 171.8 215 47.4
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 5.5e-41 171.8 215 47.0
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.1e-40 169.9 216 48.1
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.7e-40 169.5 217 48.8
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 6.1e-40 168.3 201 48.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 6.1e-40 168.3 206 47.1
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 8.0e-40 167.9 222 46.8
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.0e-39 167.5 215 46.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.4e-39 167.2 216 45.4
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 3.0e-39 166.0 215 47.0
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 4.0e-39 165.6 208 48.6
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 5.2e-39 165.2 213 46.5
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 5.2e-39 165.2 215 48.4
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 6.8e-39 164.9 186 51.1
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 6.8e-39 164.9 214 45.3
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.2e-38 164.1 216 44.9
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.2e-38 164.1 214 46.3
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 2.0e-38 163.3 213 44.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.0e-38 163.3 212 43.9
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.0e-38 163.3 214 43.9
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 2.6e-38 162.9 145 60.0
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.6e-38 162.9 215 44.2
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.8e-37 159.5 215 43.7
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 4.8e-37 158.7 214 43.9
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 8.3e-37 157.9 215 42.8
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 8.3e-37 157.9 213 44.1
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 8.3e-37 157.9 213 43.2
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.1e-36 157.5 212 42.9
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.1e-36 157.5 215 43.7
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.1e-36 155.6 214 41.6
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.1e-36 155.6 215 42.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 5.4e-36 155.2 215 43.7
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 5.4e-36 155.2 215 43.3
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 7.0e-36 154.8 215 43.3
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.2e-35 154.1 214 43.0
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.6e-35 153.7 215 40.9
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 2.7e-35 152.9 214 43.0
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 3.5e-35 152.5 185 47.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 5.9e-35 151.8 224 42.9
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.0e-34 151.0 215 42.3
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 2.9e-34 149.4 215 41.9
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.9e-34 149.4 215 44.2
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 6.5e-34 148.3 221 41.6
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.5e-33 146.4 194 47.4
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 4.7e-32 142.1 188 46.8
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 6.1e-32 141.7 218 40.8
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 8.0e-32 141.4 198 48.0
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.3e-31 139.8 215 41.9
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 4.0e-31 139.0 217 42.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.0e-30 136.7 213 39.9
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.2e-29 133.3 216 38.9
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 6.3e-29 131.7 194 43.3
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.8e-28 130.2 214 40.2
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.8e-28 130.2 212 39.6
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 3.1e-28 129.4 187 44.9
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 5.4e-28 128.6 216 39.4
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.5e-27 125.9 213 38.0
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.9e-27 125.2 213 38.0
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.8e-26 122.5 185 41.1
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 6.4e-21 105.1 214 30.4
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.8e-20 103.6 193 35.8
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 7.0e-20 101.7 213 31.0
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.2e-19 100.9 138 43.5
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.0e-18 96.3 136 41.9
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 5.0e-18 95.5 185 32.4
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 5.6e-17 92.0 200 32.5
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.0e-16 88.2 74 66.2
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.0e-16 88.2 74 66.2
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.1e-15 86.3 178 34.3
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.1e-08 63.5 104 39.4


User provided reference genes

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