Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 1.7e-45 185.7 94 100.0
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 1.9e-33 145.6 95 85.3
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 1.9e-33 145.6 95 82.1
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 4.8e-32 141.0 95 83.2
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 2.4e-31 138.7 94 79.8
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 1.3e-29 132.9 97 79.4
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 2.2e-29 132.1 96 77.1
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 1.1e-28 129.8 98 77.6
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 7.9e-27 123.6 99 75.8
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 1.3e-26 122.9 98 75.5
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 1.9e-25 119.0 92 68.5
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 9.3e-20 100.1 93 53.8
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 2.3e-18 95.5 92 54.3
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 5.1e-18 94.4 93 51.6
C06p02170 Brassica napus HOM05D007627 ORTHO05D009640 6.7e-18 94.0 95 62.1
A10p06200 Brassica napus HOM05D007627 ORTHO05D009640 8.7e-18 93.6 95 62.1
BraA10t42888Z Brassica rapa HOM05D007627 ORTHO05D009640 8.7e-18 93.6 95 62.1
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 1.9e-17 92.4 93 53.8
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 2.5e-17 92.0 93 53.8
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 3.3e-17 91.7 94 57.4
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 4.3e-17 91.3 92 51.1
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 9.7e-17 90.1 94 53.2
BolC6t35346H Brassica oleracea HOM05D007627 ORTHO05D009640 1.3e-16 89.7 95 61.1
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 1.3e-16 89.7 93 52.7
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 1.3e-16 89.7 94 52.1
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 1.6e-16 89.4 61 70.5
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 3.7e-16 88.2 94 50.0
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 8.2e-16 87.0 94 54.3
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 8.2e-16 87.0 94 53.2
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 1.1e-15 86.7 93 48.4
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 1.1e-15 86.7 93 50.5
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 3.1e-15 85.1 94 52.1
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 3.1e-15 85.1 94 52.1
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 5.3e-15 84.3 94 50.0
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 6.9e-15 84.0 92 48.9
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 9.0e-15 83.6 91 52.7
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 9.0e-15 83.6 94 52.1
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 9.0e-15 83.6 87 54.0
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 9.0e-15 83.6 93 47.3
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 9.0e-15 83.6 92 52.2
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 1.2e-14 83.2 93 48.4
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 1.2e-14 83.2 92 52.2
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 1.2e-14 83.2 94 51.1
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 2.0e-14 82.4 93 50.5
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 2.0e-14 82.4 94 52.1
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 2.6e-14 82.0 94 48.9
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 3.4e-14 81.6 89 52.8
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 3.4e-14 81.6 79 53.2
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 3.4e-14 81.6 95 49.5
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 4.5e-14 81.3 92 46.7
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 4.5e-14 81.3 78 59.0
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 4.5e-14 81.3 82 54.9
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 4.5e-14 81.3 82 54.9
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 4.5e-14 81.3 71 57.7
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 7.7e-14 80.5 93 49.5
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 7.7e-14 80.5 79 49.4
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 7.7e-14 80.5 93 51.6
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 7.7e-14 80.5 97 49.5
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 1.0e-13 80.1 81 54.3
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 1.3e-13 79.7 92 46.7
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 1.3e-13 79.7 79 54.4
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.7e-13 79.3 82 53.7
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 2.2e-13 79.0 93 48.4
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 2.2e-13 79.0 93 49.5
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 2.2e-13 79.0 92 46.7
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 5.0e-13 77.8 88 46.6
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 1.1e-12 76.6 72 50.0
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 1.4e-12 76.3 77 51.9
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 1.9e-12 75.9 92 48.9
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 1.9e-12 75.9 92 45.7
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 4.2e-12 74.7 89 49.4
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 7.2e-12 73.9 92 45.7
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 7.2e-12 73.9 94 46.8
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 1.2e-11 73.2 82 51.2
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 1.2e-11 73.2 77 53.2
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 3.6e-11 71.6 92 45.7
AT1G47813 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 4.6e-11 71.2 95 53.7
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 4.6e-11 71.2 78 56.4
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 4.6e-11 71.2 80 48.8
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 6.1e-11 70.9 90 44.4
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 1.4e-10 69.7 92 42.4
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 1.4e-10 69.7 82 52.4
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 1.4e-10 69.7 90 44.4
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 1.8e-10 69.3 92 47.8
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 2.3e-10 68.9 82 48.8
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 2.3e-10 68.9 92 41.3
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 3.0e-10 68.6 90 43.3
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 8.8e-10 67.0 70 51.4
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 8.8e-10 67.0 60 60.0
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 1.5e-09 66.2 81 49.4
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.5e-09 66.2 92 41.3
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 2.0e-09 65.9 84 48.8
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 2.5e-09 65.5 72 48.6
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 2.5e-09 65.5 78 44.9
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 3.3e-09 65.1 69 52.2
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 4.3e-09 64.7 90 41.1
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 7.4e-09 63.9 84 47.6
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-08 61.2 72 38.9
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 1.4e-07 59.7 79 44.3


User provided reference genes

Program Settings