Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 5.8e-61 237.7 146 100.0
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 5.3e-46 188.0 150 85.3
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.5e-45 186.4 159 78.6
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.9e-44 182.2 156 78.8
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 1.1e-43 180.3 155 80.0
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 1.4e-43 179.9 155 80.0
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.4e-43 179.9 155 79.4
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.5e-43 179.1 153 79.7
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 5.5e-43 177.9 155 79.4
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.2e-42 176.8 157 75.8
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 5.1e-41 171.4 155 78.7
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.2e-35 152.1 157 70.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.5e-24 116.7 162 57.4
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 5.7e-24 114.8 103 80.6
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 5.7e-24 114.8 103 80.6
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 7.4e-24 114.4 103 80.6
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.3e-23 113.6 154 57.8
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 2.8e-23 112.5 108 74.1
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 3.7e-23 112.1 101 74.3
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 4.8e-23 111.7 108 64.8
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 8.2e-23 110.9 93 71.0
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 8.2e-23 110.9 115 72.2
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.4e-22 110.2 104 70.2
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.4e-22 110.2 93 71.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.4e-22 110.2 93 71.0
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.4e-22 110.2 101 76.2
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 1.8e-22 109.8 93 68.8
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 4.1e-22 108.6 129 62.0
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 5.3e-22 108.2 104 65.4
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 7.0e-22 107.8 94 70.2
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 7.0e-22 107.8 105 67.6
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 9.1e-22 107.5 94 69.1
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 9.1e-22 107.5 108 72.2
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 9.1e-22 107.5 102 77.5
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.5e-21 106.7 127 59.1
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.0e-21 106.3 93 69.9
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.6e-21 105.9 92 67.4
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.6e-21 105.9 92 67.4
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 4.5e-21 105.1 94 68.1
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 7.7e-21 104.4 93 74.2
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.7e-20 103.2 102 73.5
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.7e-20 103.2 102 70.6
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.7e-20 103.2 101 74.3
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.7e-20 103.2 96 76.0
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 3.8e-20 102.1 103 68.9
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.8e-20 102.1 102 74.5
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 5.0e-20 101.7 102 74.5
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 8.5e-20 100.9 106 70.8
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 8.5e-20 100.9 159 54.7
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.1e-19 100.5 98 71.4
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.1e-19 100.5 104 75.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.4e-19 100.1 114 66.7
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.9e-19 99.8 102 73.5
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.9e-19 99.8 98 74.5
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.5e-19 99.4 98 74.5
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 2.5e-19 99.4 115 60.9
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 3.2e-19 99.0 110 70.9
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 5.5e-19 98.2 96 77.1
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 5.5e-19 98.2 114 64.0
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 7.2e-19 97.8 103 70.9
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 7.2e-19 97.8 100 71.0
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.2e-19 97.8 102 72.5
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 7.2e-19 97.8 97 77.3
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 9.4e-19 97.4 97 76.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-18 97.1 104 71.2
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-18 97.1 104 71.2
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-18 97.1 104 71.2
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.2e-18 97.1 104 72.1
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 1.6e-18 96.7 105 68.6
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.6e-18 96.7 104 71.2
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.6e-18 96.7 104 72.1
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.6e-18 96.7 98 72.4
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.6e-18 96.7 95 74.7
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.1e-18 96.3 117 63.2
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.1e-18 96.3 103 70.9
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.1e-18 96.3 93 68.8
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.1e-18 96.3 103 60.2
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.7e-18 95.9 97 72.2
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.7e-18 95.9 105 74.3
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 2.7e-18 95.9 98 72.4
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 4.7e-18 95.1 104 71.2
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 4.7e-18 95.1 97 76.3
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 4.7e-18 95.1 97 76.3
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 4.7e-18 95.1 110 63.6
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 4.7e-18 95.1 104 72.1
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 6.1e-18 94.7 115 60.0
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 8.0e-18 94.4 98 71.4
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.0e-17 94.0 106 65.1
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.4e-17 93.6 104 71.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.4e-17 93.6 110 63.6
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.8e-17 93.2 103 71.8
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.8e-17 93.2 103 64.1
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.8e-17 93.2 104 71.2
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 2.3e-17 92.8 102 73.5
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 2.3e-17 92.8 93 75.3
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 3.0e-17 92.4 106 62.3
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 3.9e-17 92.0 108 67.6
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.9e-17 92.0 101 70.3
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 3.9e-17 92.0 104 70.2
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 5.2e-17 91.7 98 73.5
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.1e-16 90.5 98 70.4
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.5e-16 90.1 98 69.4
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.0e-16 89.7 105 67.6
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 3.3e-16 89.0 105 69.5
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 3.3e-16 89.0 105 69.5
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 3.3e-16 89.0 97 64.9
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.3e-16 89.0 128 60.2
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 5.7e-16 88.2 99 70.7
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 5.7e-16 88.2 103 68.9
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 7.4e-16 87.8 175 48.0
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.3e-15 87.0 89 71.9
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.3e-15 87.0 161 49.1
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.7e-15 86.7 114 58.8
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.2e-15 86.3 117 53.8
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 3.7e-15 85.5 103 67.0
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.1e-14 84.0 67 80.6
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.4e-14 83.6 111 56.8
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.8e-14 83.2 99 60.6
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.8e-14 83.2 97 61.9
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.8e-14 83.2 97 61.9
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.4e-14 82.8 98 71.4
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 2.4e-14 82.8 99 71.7
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.0e-13 79.7 87 63.2
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.5e-13 79.0 119 55.5
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 3.5e-13 79.0 99 60.6
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 3.5e-13 79.0 58 70.7
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 5.9e-13 78.2 41 90.2
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.3e-12 77.0 97 59.8
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 1.7e-12 76.6 87 67.8
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.8e-12 75.5 86 53.5
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 5.0e-12 75.1 88 70.5
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 1.9e-11 73.2 119 52.9
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.4e-11 70.9 121 57.0
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 2.7e-10 69.3 96 60.4
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.1e-10 68.2 68 72.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.0e-09 67.4 148 45.3
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 1.0e-09 67.4 88 56.8
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.4e-09 67.0 68 72.1
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 3.0e-09 65.9 108 50.0
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 3.0e-09 65.9 119 48.7
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 8.8e-09 64.3 67 61.2
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 2.0e-08 63.2 89 55.1
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.6e-08 62.8 106 51.9
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.7e-07 60.1 67 64.2
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 3.7e-07 58.9 108 50.0
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.4e-06 57.0 106 55.7
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 1.8e-06 56.6 107 47.7
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.8e-06 56.6 84 64.3
Aa31LG6G11730 Aethionema arabicum HOM05D004577 ORTHO05D005062 3.1e-06 55.8 125 45.6
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 7.0e-06 54.7 124 49.2
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 9.1e-06 54.3 137 40.1
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 9.1e-06 54.3 121 43.0


User provided reference genes

Program Settings