Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 4.6e-83 311.2 163 100.0
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 1.4e-79 299.7 163 96.9
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 3.1e-79 298.5 163 96.3
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 3.8e-77 291.6 163 94.5
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 8.4e-77 290.4 163 93.3
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 8.4e-77 290.4 163 93.3
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 8.4e-77 290.4 163 93.3
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 1.4e-76 289.7 163 93.9
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 1.4e-76 289.7 163 93.9
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 9.3e-76 287.0 163 92.0
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 1.6e-75 286.2 164 93.9
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 1.6e-75 286.2 164 93.9
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 1.6e-75 286.2 164 94.5
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 2.1e-75 285.8 163 91.4
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 2.1e-75 285.8 163 91.4
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 2.7e-75 285.4 163 91.4
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 2.7e-75 285.4 163 91.4
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 3.5e-75 285.0 164 93.3
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 7.9e-75 283.9 162 93.2
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 7.9e-75 283.9 162 93.2
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 3.9e-74 281.6 166 92.8
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.1e-73 280.0 164 90.2
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 4.3e-73 278.1 164 90.9
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 6.3e-72 274.2 163 88.3
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 4.1e-71 271.6 163 88.3
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 7.2e-68 260.8 163 84.7
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 7.4e-65 250.8 163 79.8
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 3.7e-56 221.9 166 73.5
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 1.4e-55 219.9 160 73.1
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 4.1e-55 218.4 163 75.5
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 5.3e-55 218.0 162 75.3
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 5.3e-55 218.0 160 75.0
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 1.2e-54 216.9 165 73.9
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 1.5e-54 216.5 163 77.3
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 3.5e-54 215.3 160 74.4
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 3.5e-54 215.3 160 74.4
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 3.5e-54 215.3 163 73.6
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 5.9e-54 214.5 163 70.6
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 2.2e-53 212.6 167 67.7
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 2.9e-53 212.2 168 70.2
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 6.5e-53 211.1 169 68.0
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 6.5e-53 211.1 163 69.3
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 1.1e-52 210.3 169 69.8
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 1.1e-52 210.3 168 66.7
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 9.4e-52 207.2 137 75.9
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.2e-51 206.8 164 72.0
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 2.1e-51 206.1 139 77.7
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 2.7e-51 205.7 166 71.1
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 3.6e-51 205.3 166 67.5
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 6.1e-51 204.5 166 69.9
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 6.1e-51 204.5 165 71.5
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 8.0e-51 204.1 166 69.9
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 8.0e-51 204.1 165 72.1
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 1.4e-50 203.4 164 69.5
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.4e-50 203.4 164 71.3
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 1.4e-50 203.4 167 68.3
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 1.4e-50 203.4 168 70.2
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 1.8e-50 203.0 161 70.2
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 2.3e-50 202.6 155 71.0
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 3.0e-50 202.2 165 71.5
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 3.9e-50 201.8 163 72.4
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 3.9e-50 201.8 164 67.7
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 5.2e-50 201.4 165 69.1
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 6.7e-50 201.1 165 67.3
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 6.7e-50 201.1 162 69.8
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 6.7e-50 201.1 138 76.8
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 8.8e-50 200.7 164 67.1
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 8.8e-50 200.7 164 67.1
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.1e-49 200.3 165 68.5
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 1.1e-49 200.3 139 76.3
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 2.0e-49 199.5 168 66.7
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 2.6e-49 199.1 140 77.1
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 2.6e-49 199.1 159 67.9
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 4.4e-49 198.4 162 69.1
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.4e-49 198.4 139 74.8
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 4.4e-49 198.4 137 74.5
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 7.4e-49 197.6 141 73.8
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 7.4e-49 197.6 137 75.2
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.4e-49 197.6 139 74.8
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 7.4e-49 197.6 165 66.7
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 9.7e-49 197.2 169 66.3
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 9.7e-49 197.2 166 68.1
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 162 70.4
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 162 70.4
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 9.7e-49 197.2 135 74.1
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 1.3e-48 196.8 156 69.9
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.3e-48 196.8 164 68.9
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 1.3e-48 196.8 162 68.5
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 1.7e-48 196.4 142 73.9
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 2.2e-48 196.1 139 74.1
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 2.8e-48 195.7 159 69.2
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 2.8e-48 195.7 162 70.4
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 2.8e-48 195.7 136 75.7
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 3.7e-48 195.3 108 87.0
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 6.3e-48 194.5 159 69.2
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 6.3e-48 194.5 156 69.9
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 1.1e-47 193.7 170 65.3
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 1.4e-47 193.4 139 74.1
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 1.8e-47 193.0 139 73.4
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 2.4e-47 192.6 139 74.1
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 7.0e-47 191.0 140 75.0
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 7.0e-47 191.0 127 78.0
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 1.6e-46 189.9 159 66.7
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 1.3e-45 186.8 101 92.1
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 2.2e-45 186.0 169 62.7
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.9e-45 185.7 101 90.1
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 3.8e-45 185.3 108 85.2
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 8.5e-45 184.1 149 67.8
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 3.2e-44 182.2 165 63.6
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 5.5e-44 181.4 118 74.6
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 3.6e-43 178.7 152 64.5
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 6.1e-43 177.9 101 84.2
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 2.0e-41 172.9 139 66.2
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.1e-39 165.2 131 67.2
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 1.2e-35 153.7 80 92.5
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 1.2e-33 147.1 97 71.1
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 7.5e-33 144.4 170 55.9
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 2.2e-32 142.9 116 64.7
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 2.2e-32 142.9 147 51.0
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 1.6e-30 136.7 94 68.1
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 3.5e-30 135.6 166 48.2
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 6.6e-29 131.3 159 47.8
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 2.3e-26 122.9 72 81.9
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 4.3e-20 102.1 90 54.4
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 3.4e-17 92.4 52 90.4
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 3.4e-17 92.4 52 90.4
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 4.4e-17 92.0 53 88.7
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 1.7e-16 90.1 101 49.5
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 6.4e-16 88.2 126 46.8
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 7.3e-12 74.7 99 40.4


User provided reference genes

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