Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011829m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 2.5e-92 342.0 169 100.0
Thhalv10011565m.g Eutrema salsugineum HOM05D000274 ORTHO05D001466 1.0e-40 170.6 88 95.5
Sp1g36820 Schrenkiella parvula HOM05D000274 ORTHO05D001466 3.6e-38 162.2 88 92.0
AT1G49970 Arabidopsis thaliana HOM05D000274 ORTHO05D001466 1.0e-37 160.6 88 90.9
A08p03440 Brassica napus HOM05D000274 ORTHO05D001466 3.0e-37 159.1 88 89.8
BraA08t32375Z Brassica rapa HOM05D000274 ORTHO05D001466 3.0e-37 159.1 88 89.8
CARHR040000 Cardamine hirsuta HOM05D000274 ORTHO05D001466 3.0e-37 159.1 128 68.8
AL1G57520 Arabidopsis lyrata HOM05D000274 ORTHO05D001466 4.0e-37 158.7 88 90.9
BolC3t21255H Brassica oleracea HOM05D000274 ORTHO05D001466 7.5e-36 154.5 89 88.8
Carub.0001s3915 Capsella rubella HOM05D000274 ORTHO05D001466 1.7e-35 153.3 88 88.6
C03p89410 Brassica napus HOM05D000274 ORTHO05D001466 1.4e-34 150.2 89 86.5
Aa31LG10G4160 Aethionema arabicum HOM05D000274 ORTHO05D001466 3.1e-34 149.1 128 64.8
BcaB04g17280 Brassica carinata HOM05D000274 ORTHO05D001466 2.2e-27 126.3 90 76.7
THA.LOC104815211 Tarenaya hassleriana HOM05D000274 ORTHO05D001466 8.6e-24 114.4 88 64.8
THA.LOC104815223 Tarenaya hassleriana HOM05D000274 ORTHO05D001466 8.6e-24 114.4 88 64.8
BraA04t18167Z Brassica rapa HOM05D006595 ORTHO05D008238 2.8e-22 109.4 65 81.5
Thhalv10017283m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 4.7e-22 108.6 92 60.9
A05p10810 Brassica napus HOM05D006595 ORTHO05D008238 6.2e-22 108.2 105 58.1
A04p26620 Brassica napus HOM05D006595 ORTHO05D008238 1.1e-21 107.5 65 80.0
C04p64040 Brassica napus HOM05D006595 ORTHO05D008238 1.1e-21 107.5 65 80.0
BcaB06g28828 Brassica carinata HOM05D006595 ORTHO05D008238 1.4e-21 107.1 65 80.0
C04p13910 Brassica napus HOM05D006595 ORTHO05D008238 4.0e-21 105.5 65 80.0
BolC4t22980H Brassica oleracea HOM05D006595 ORTHO05D008238 4.0e-21 105.5 65 80.0
BraA05t20025Z Brassica rapa HOM05D006595 ORTHO05D008238 4.0e-21 105.5 65 80.0
BcaC02g07751 Brassica carinata HOM05D006595 ORTHO05D008238 6.8e-21 104.8 65 78.5
BolC4t27880H Brassica oleracea HOM05D006595 ORTHO05D008238 6.8e-21 104.8 65 78.5
Sp4g17140 Schrenkiella parvula HOM05D006595 ORTHO05D008238 6.8e-21 104.8 64 75.0
BcaC02g11570 Brassica carinata HOM05D006595 ORTHO05D008238 2.0e-20 103.2 67 76.1
CARHR129020 Cardamine hirsuta HOM05D006595 ORTHO05D008238 1.7e-19 100.1 63 79.4
AT2G34860 Arabidopsis thaliana HOM05D006595 ORTHO05D008238 2.3e-16 89.7 66 69.7
Carub.0004s1654 Capsella rubella HOM05D006595 ORTHO05D008238 3.3e-15 85.9 66 68.2
BcaB01g03109 Brassica carinata HOM05D006595 ORTHO05D008238 2.8e-14 82.8 51 78.4
BcaC07g42181 Brassica carinata HOM05D006595 ORTHO05D008238 4.7e-14 82.0 62 67.7
Thecc.02G115600 Theobroma cacao HOM05D000274 ORTHO05D001466 8.9e-13 77.8 88 52.3
Duzib132G0689 Durio zibethinus HOM05D000274 ORTHO05D001466 2.0e-12 76.6 113 45.1
THA.LOC104815114 Tarenaya hassleriana HOM05D006595 ORTHO05D008238 3.4e-12 75.9 54 74.1
Aa31sc409G10 Aethionema arabicum HOM05D006595 ORTHO05D008238 9.9e-12 74.3 65 56.9
BcaB01g02723 Brassica carinata HOM05D006595 ORTHO05D008238 2.2e-11 73.2 61 59.0
COL.COLO4_32529 Corchorus olitorius HOM05D000274 ORTHO05D001466 2.2e-11 73.2 89 48.3
Haze_10235 Corylus avellana HOM05D000274 ORTHO05D001466 3.7e-11 72.4 97 43.3
TAR628G0151 Trochodendron aralioides HOM05D000274 ORTHO05D001466 6.4e-11 71.6 64 50.0
QL01p010272 Quercus lobata HOM05D006595 ORTHO05D008238 4.1e-10 68.9 67 53.7
Dinv42229 Davidia involucrata HOM05D000274 ORTHO05D001466 7.1e-10 68.2 91 48.4
Manes.07G061800 Manihot esculenta HOM05D000274 ORTHO05D001466 1.2e-09 67.4 93 48.4
Cpa.g.sc106.60 Carica papaya HOM05D000274 ORTHO05D001466 2.1e-09 66.6 92 50.0
EL10Ac8g19382 Beta vulgaris HOM05D000274 ORTHO05D001466 2.7e-09 66.2 94 45.7
AUR62034086 Chenopodium quinoa HOM05D000274 ORTHO05D001466 3.5e-09 65.9 97 43.3
Gohir.A04G118600 Gossypium hirsutum HOM05D000274 ORTHO05D001466 4.6e-09 65.5 87 47.1
Thecc.09G215500 Theobroma cacao HOM05D006595 ORTHO05D008238 4.6e-09 65.5 59 57.6
Ah.09g231870 Amaranthus hybridus HOM05D000274 ORTHO05D001466 1.0e-08 64.3 129 37.2
Cpa.g.sc119.91 Carica papaya HOM05D006595 ORTHO05D008238 1.0e-08 64.3 67 50.7
TWI14G0876 Tripterygium wilfordii HOM05D000274 ORTHO05D001466 1.0e-08 64.3 91 44.0
Hma1.2p1_1023F.1_g248840 Hydrangea macrophylla HOM05D000274 ORTHO05D001466 1.3e-08 63.9 92 47.8
Hma1.2p1_1773F.1_g301710 Hydrangea macrophylla HOM05D000274 ORTHO05D001466 1.3e-08 63.9 92 47.8
Actinidia04380 Actinidia chinensis HOM05D000274 ORTHO05D001466 1.7e-08 63.5 94 48.9
Haze_22995 Corylus avellana HOM05D006595 ORTHO05D008238 1.7e-08 63.5 66 50.0
AUR62042997 Chenopodium quinoa HOM05D000274 ORTHO05D001466 2.3e-08 63.2 100 42.0
Gohir.D04G160300 Gossypium hirsutum HOM05D000274 ORTHO05D001466 2.3e-08 63.2 87 46.0
Gorai.012G147700 Gossypium raimondii HOM05D000274 ORTHO05D001466 2.3e-08 63.2 87 46.0
Prupe.6G012000 Prunus persica HOM05D006595 ORTHO05D008238 3.0e-08 62.8 67 50.7
PSO170G6648 Papaver somniferum HOM05D000274 ORTHO05D001466 5.1e-08 62.0 95 44.2
Cfa009626 Carpinus fangiana HOM05D006595 ORTHO05D008238 6.6e-08 61.6 66 48.5
GSVIVG01037850001 Vitis vinifera HOM05D000274 ORTHO05D001466 6.6e-08 61.6 93 43.0
Eucgr.I01073 Eucalyptus grandis HOM05D000274 ORTHO05D001466 8.6e-08 61.2 89 43.8
Atru.chr5.2377 Acer truncatum HOM05D000274 ORTHO05D001466 1.9e-07 60.1 90 42.2
arahy.Tifrunner.gnm1.ann1.28MAAX Arachis hypogaea HOM05D000274 ORTHO05D001466 2.5e-07 59.7 90 41.1
PSO017G2520 Papaver somniferum HOM05D000274 ORTHO05D001466 2.5e-07 59.7 71 49.3
CiPaw.13G171400 Carya illinoinensis HOM05D006595 ORTHO05D008238 3.3e-07 59.3 66 45.5
ClCG02G006760 Citrullus lanatus HOM05D000274 ORTHO05D001466 3.3e-07 59.3 81 44.4
COL.COLO4_10447 Corchorus olitorius HOM05D006595 ORTHO05D008238 3.3e-07 59.3 58 53.4
Duzib168G0997 Durio zibethinus HOM05D006595 ORTHO05D008238 3.3e-07 59.3 59 54.2
AL4G30870 Arabidopsis lyrata HOM05D006595 ORTHO05D008238 4.3e-07 58.9 108 38.0
Manes.10G079900 Manihot esculenta HOM05D000274 ORTHO05D001466 4.3e-07 58.9 92 43.5
RcHm_v2.0_Chr6g0253511 Rosa chinensis HOM05D000274 ORTHO05D001466 4.3e-07 58.9 67 44.8
TWI34G0416 Tripterygium wilfordii HOM05D006595 ORTHO05D008238 4.3e-07 58.9 67 44.8
Manes.03G089200 Manihot esculenta HOM05D006595 ORTHO05D008238 5.6e-07 58.5 132 33.3
PGR120G0008 Punica granatum HOM05D000274 ORTHO05D001466 5.6e-07 58.5 76 44.7
PGR142G0102 Punica granatum HOM05D000274 ORTHO05D001466 5.6e-07 58.5 76 44.7
Sabra09G0069200 Salix brachista HOM05D000274 ORTHO05D001466 5.6e-07 58.5 93 43.0
CSS0014259 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D001466 9.5e-07 57.8 92 38.0
CANSAT25G3838 Cannabis sativa HOM05D000274 ORTHO05D001466 9.5e-07 57.8 91 44.0
Ciclev10016858m.g Citrus clementina HOM05D006595 ORTHO05D008238 1.2e-06 57.4 79 39.2
Lsat_1_v5_gn_7_85281 Lactuca sativa HOM05D000274 ORTHO05D001466 1.2e-06 57.4 85 38.8
Hund12580 Selenicereus undatus HOM05D000274 ORTHO05D001466 1.6e-06 57.0 90 43.3
arahy.Tifrunner.gnm1.ann1.NM7WM1 Arachis hypogaea HOM05D000274 ORTHO05D001466 2.1e-06 56.6 90 40.0
Potri.001G009800 Populus trichocarpa HOM05D006595 ORTHO05D008238 2.1e-06 56.6 66 43.9
SEGI_35069 Sequoiadendron giganteum HOM05D000274 ORTHO05D001466 2.1e-06 56.6 83 37.3
unitig_699.g19871 Utricularia gibba HOM05D000274 ORTHO05D001466 2.1e-06 56.6 72 43.1
MELO3C018514.2 Cucumis melo HOM05D000274 ORTHO05D001466 2.8e-06 56.2 81 42.0
Dinv13419 Davidia involucrata HOM05D006595 ORTHO05D008238 3.6e-06 55.8 68 42.6
MD03G1011600 Malus domestica HOM05D006595 ORTHO05D008238 3.6e-06 55.8 67 49.3
RcHm_v2.0_Chr5g0081351 Rosa chinensis HOM05D006595 ORTHO05D008238 3.6e-06 55.8 65 46.2
Sed0025433 Sechium edule HOM05D000274 ORTHO05D001466 3.6e-06 55.8 62 51.6
Ciclev10028638m.g Citrus clementina HOM05D000274 ORTHO05D001466 4.7e-06 55.5 92 41.3
Potri.009G089300 Populus trichocarpa HOM05D000274 ORTHO05D001466 4.7e-06 55.5 93 41.9
Atru.chr3.2190 Acer truncatum HOM05D006595 ORTHO05D008238 6.2e-06 55.1 69 46.4
CsaV3_7G007880 Cucumis sativus L. HOM05D000274 ORTHO05D001466 6.2e-06 55.1 83 42.2
PGR102G3301 Punica granatum HOM05D006595 ORTHO05D008238 6.2e-06 55.1 70 48.6
Glyma.20G133300 Glycine max HOM05D000274 ORTHO05D001466 8.1e-06 54.7 63 50.8
Sabra01G0007800 Salix brachista HOM05D006595 ORTHO05D008238 8.1e-06 54.7 63 46.0
GSVIVG01025384001 Vitis vinifera HOM05D006595 ORTHO05D008238 8.1e-06 54.7 67 37.3


User provided reference genes

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