Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 7.7e-89 330.5 171 100.0
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 2.1e-49 199.5 118 89.8
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 3.9e-48 195.3 118 89.0
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 1.5e-47 193.4 118 86.4
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 1.5e-47 193.4 118 86.4
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 2.1e-46 189.5 119 87.4
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 1.1e-45 187.2 119 85.7
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 2.0e-44 183.0 118 85.6
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 2.0e-44 183.0 118 85.6
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 2.6e-44 182.6 118 85.6
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 7.6e-44 181.0 112 84.8
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 4.9e-43 178.3 120 80.8
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 1.9e-42 176.4 118 79.7
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 1.9e-42 176.4 119 81.5
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 1.6e-41 173.3 119 81.5
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 1.3e-40 170.2 119 79.0
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 1.3e-40 170.2 119 79.0
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 8.7e-40 167.5 119 79.0
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 1.3e-32 143.7 118 71.2
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 1.7e-27 126.7 76 84.2
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 1.1e-26 124.0 107 67.3
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 5.1e-24 115.2 118 53.4
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 3.3e-23 112.5 121 52.1
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 3.7e-22 109.0 114 54.4
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 6.2e-22 108.2 118 52.5
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 6.2e-22 108.2 119 54.6
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 1.1e-21 107.5 131 51.1
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 1.8e-21 106.7 111 55.0
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 4.0e-21 105.5 117 52.1
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 6.9e-21 104.8 117 53.8
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 1.5e-20 103.6 104 56.7
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 2.6e-20 102.8 110 53.6
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 2.6e-20 102.8 118 50.8
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 3.4e-20 102.4 118 50.8
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 3.4e-20 102.4 117 52.1
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 4.5e-20 102.1 104 55.8
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 5.8e-20 101.7 121 52.9
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 5.8e-20 101.7 123 50.4
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 5.8e-20 101.7 118 51.7
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 1.0e-19 100.9 117 51.3
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 1.3e-19 100.5 110 53.6
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 1.3e-19 100.5 117 49.6
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 2.2e-19 99.8 100 55.0
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 2.9e-19 99.4 120 49.2
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 2.9e-19 99.4 118 51.7
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 3.8e-19 99.0 116 46.6
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 6.5e-19 98.2 117 53.0
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 8.4e-19 97.8 118 46.6
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 1.1e-18 97.4 105 55.2
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 1.4e-18 97.1 118 49.2
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 1.4e-18 97.1 107 51.4
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 1.4e-18 97.1 115 48.7
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 1.9e-18 96.7 117 49.6
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 2.5e-18 96.3 125 45.6
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 3.2e-18 95.9 117 48.7
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.2e-18 95.9 107 53.3
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 3.2e-18 95.9 119 48.7
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 5.5e-18 95.1 112 51.8
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 5.5e-18 95.1 119 47.1
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 5.5e-18 95.1 111 49.5
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 7.1e-18 94.7 118 49.2
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 7.1e-18 94.7 111 49.5
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 9.3e-18 94.4 118 50.0
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 9.3e-18 94.4 116 48.3
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 1.2e-17 94.0 108 50.9
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 1.2e-17 94.0 98 54.1
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 1.6e-17 93.6 118 48.3
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 2.7e-17 92.8 119 48.7
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 2.7e-17 92.8 116 48.3
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.5e-17 92.4 98 53.1
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 4.6e-17 92.0 116 49.1
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 6.0e-17 91.7 118 47.5
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 1.0e-16 90.9 119 47.1
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 1.0e-16 90.9 89 58.4
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 1.0e-16 90.9 99 49.5
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 5.1e-16 88.6 116 46.6
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 5.1e-16 88.6 85 51.8
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 6.7e-16 88.2 99 47.5
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 6.7e-16 88.2 117 47.9
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 1.1e-15 87.4 89 53.9
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 1.1e-15 87.4 107 43.9
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 1.1e-15 87.4 108 46.3
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 1.1e-15 87.4 88 53.4
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 1.9e-15 86.7 76 64.5
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 1.9e-15 86.7 76 64.5
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 2.5e-15 86.3 101 46.5
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 5.7e-15 85.1 95 48.4
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 5.7e-15 85.1 118 42.4
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 3.7e-14 82.4 96 46.9
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 3.7e-14 82.4 107 46.7
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 4.8e-14 82.0 103 47.6
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 5.3e-13 78.6 114 43.9
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 2.6e-12 76.3 118 40.7
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.2e-11 73.2 103 44.7
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 5.0e-11 72.0 96 46.9
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 6.5e-11 71.6 71 54.9
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 6.5e-11 71.6 121 40.5
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 8.4e-11 71.2 96 45.8
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 1.4e-10 70.5 121 40.5
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 9.3e-10 67.8 116 39.7
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 6.7e-08 61.6 111 37.8
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 4.3e-07 58.9 81 44.4
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 4.8e-06 55.5 60 51.7


User provided reference genes

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