Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 4.5e-107 391.3 210 100.0
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 5.0e-98 361.3 210 93.8
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 7.5e-94 347.4 212 90.6
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 3.7e-93 345.1 212 89.6
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 1.1e-92 343.6 213 90.1
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 1.1e-92 343.6 213 90.1
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 1.1e-92 343.6 213 90.1
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 2.4e-92 342.4 212 88.7
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 3.2e-92 342.0 209 90.4
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 7.3e-89 330.9 209 87.6
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 3.6e-88 328.6 209 88.0
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 3.1e-87 325.5 208 86.1
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 3.7e-77 292.0 198 82.3
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 1.4e-68 263.5 222 69.8
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 4.1e-68 261.9 228 68.0
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 7.1e-68 261.2 183 78.7
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 1.6e-67 260.0 183 78.7
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 1.0e-66 257.3 213 72.8
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 2.3e-66 256.1 221 68.8
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 8.6e-66 254.2 217 71.4
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 8.6e-66 254.2 179 78.2
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.1e-65 253.8 177 78.5
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.5e-65 253.4 178 78.7
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.5e-65 253.4 178 78.7
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.5e-65 253.4 177 78.0
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 1.5e-65 253.4 183 78.7
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 1.5e-65 253.4 215 71.2
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 3.3e-65 252.3 177 78.0
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 4.0e-63 245.4 209 68.4
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 4.0e-63 245.4 180 78.3
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 6.8e-63 244.6 181 75.7
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 8.9e-63 244.2 208 66.8
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.9e-63 244.2 176 77.8
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.2e-62 243.8 177 75.1
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.0e-62 243.0 176 77.3
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 2.6e-62 242.7 176 76.1
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 3.4e-62 242.3 178 74.2
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 5.8e-62 241.5 206 68.9
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 5.8e-62 241.5 206 68.9
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 5.8e-62 241.5 176 76.1
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 7.6e-62 241.1 178 75.8
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 1.3e-61 240.4 179 74.3
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.7e-61 240.0 182 73.6
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 1.7e-61 240.0 178 74.2
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 2.2e-61 239.6 150 84.0
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 4.9e-61 238.4 181 72.9
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 6.4e-61 238.0 175 74.3
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 8.4e-61 237.7 217 65.9
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 1.4e-60 236.9 181 72.9
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 1.4e-60 236.9 178 73.6
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 1.4e-60 236.9 182 73.6
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 1.4e-60 236.9 178 75.3
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 1.4e-60 236.9 178 75.3
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 1.9e-60 236.5 161 78.3
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 2.4e-60 236.1 210 66.2
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 2.4e-60 236.1 150 83.3
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 3.2e-60 235.7 178 72.5
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 3.2e-60 235.7 177 72.9
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 4.2e-60 235.3 161 80.1
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 4.2e-60 235.3 223 64.6
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 9.3e-60 234.2 179 74.9
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 2.1e-59 233.0 178 73.0
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 6.0e-59 231.5 161 77.0
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.7e-58 229.9 185 68.6
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 6.6e-58 228.0 177 72.9
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 1.1e-57 227.3 162 77.2
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 1.9e-57 226.5 178 70.2
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 1.9e-57 226.5 147 82.3
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 2.5e-57 226.1 181 71.8
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 2.5e-57 226.1 181 70.2
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 3.3e-57 225.7 179 73.2
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 3.3e-57 225.7 223 62.8
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 4.3e-57 225.3 159 76.7
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 5.6e-57 224.9 165 74.5
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 7.3e-57 224.6 160 76.9
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 7.3e-57 224.6 212 63.2
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 9.6e-57 224.2 179 72.1
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 9.6e-57 224.2 204 65.7
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 2.1e-56 223.0 181 72.4
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 1.4e-55 220.3 191 67.0
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 4.0e-55 218.8 165 72.7
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.0e-54 216.5 137 84.7
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 2.9e-53 212.6 161 74.5
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 3.8e-53 212.2 176 67.0
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 4.9e-53 211.8 216 59.3
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 2.7e-51 206.1 171 68.4
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 3.3e-49 199.1 178 62.9
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 4.3e-49 198.7 194 60.3
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 5.6e-49 198.4 131 78.6
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 5.3e-47 191.8 131 80.9
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 2.0e-46 189.9 145 70.3
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 4.5e-46 188.7 159 62.9
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 3.0e-42 176.0 118 78.0
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 5.6e-41 171.8 164 62.2
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 3.7e-40 169.1 174 56.9
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 1.2e-38 164.1 106 82.1
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 1.3e-37 160.6 107 80.4
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 4.9e-37 158.7 212 51.4
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 9.3e-28 127.9 82 84.1
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 6.1e-27 125.2 82 82.9
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 3.1e-23 112.8 88 67.0
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 3.1e-23 112.8 183 40.4
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 9.0e-23 111.3 74 81.1
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 4.6e-19 99.0 102 58.8
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 1.5e-17 94.0 58 86.2
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 1.2e-14 84.3 112 41.1
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 4.7e-11 72.4 48 79.2
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 6.1e-11 72.0 46 82.6
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 1.4e-10 70.9 107 43.0
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 2.6e-09 66.6 103 35.9
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.5e-06 57.4 37 78.4


User provided reference genes

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