Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 8.6e-128 460.3 227 100.0
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 5.8e-108 394.4 227 85.5
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 7.6e-108 394.0 224 86.2
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 4.9e-107 391.3 225 85.8
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 6.6e-104 380.9 228 83.8
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 4.7e-102 374.8 228 82.9
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 6.2e-102 374.4 226 83.6
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 3.8e-99 365.2 228 82.0
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 3.8e-99 365.2 228 82.0
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 3.0e-96 355.5 224 80.4
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 8.7e-96 354.0 206 84.0
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.5e-84 315.1 205 74.6
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.2e-82 308.5 205 73.7
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.8e-78 295.8 228 70.2
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.1e-70 269.6 200 66.0
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 2.1e-70 269.6 161 78.3
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 4.8e-70 268.5 178 74.2
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.1e-69 267.3 222 61.7
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 1.4e-69 266.9 200 67.5
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.4e-69 266.9 200 65.5
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.4e-69 266.9 200 65.5
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.4e-69 266.2 158 77.8
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 3.1e-69 265.8 149 81.2
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 3.1e-69 265.8 218 61.5
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 4.1e-69 265.4 215 63.7
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 9.0e-69 264.2 190 67.9
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 3.4e-68 262.3 216 60.6
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 5.8e-68 261.5 190 65.3
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 6.5e-67 258.1 182 69.2
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.1e-66 257.3 207 59.9
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.4e-66 256.9 165 73.3
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 1.4e-66 256.9 187 64.7
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.2e-66 255.8 197 65.5
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 5.5e-66 255.0 196 62.8
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 5.5e-66 255.0 145 77.2
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.1e-66 254.6 182 66.5
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 7.1e-66 254.6 151 74.8
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 9.3e-66 254.2 215 61.9
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 9.3e-66 254.2 214 60.7
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 9.3e-66 254.2 191 65.4
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 2.1e-65 253.1 160 71.9
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 6.1e-65 251.5 190 63.2
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 6.1e-65 251.5 148 77.0
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 6.1e-65 251.5 160 73.1
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.0e-64 250.8 160 72.5
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.0e-64 250.8 212 59.4
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 1.3e-64 250.4 165 70.3
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.8e-64 250.0 196 61.7
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 1.8e-64 250.0 156 73.1
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.8e-64 250.0 214 61.7
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 2.3e-64 249.6 206 63.6
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 6.7e-64 248.1 173 68.2
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.5e-63 246.9 171 68.4
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.9e-63 246.5 241 53.9
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 2.5e-63 246.1 208 59.6
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 2.5e-63 246.1 214 59.8
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 2.5e-63 246.1 216 59.7
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 7.4e-63 244.6 146 76.7
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 9.7e-63 244.2 146 75.3
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 2.8e-62 242.7 197 62.9
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 2.8e-62 242.7 200 64.0
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 3.7e-62 242.3 146 76.0
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 3.7e-62 242.3 209 59.8
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.8e-62 241.9 146 75.3
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.8e-62 241.9 146 75.3
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 4.8e-62 241.9 173 67.6
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 4.8e-62 241.9 148 74.3
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 6.3e-62 241.5 161 69.6
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.8e-61 240.0 143 76.2
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 3.1e-61 239.2 147 72.1
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 5.3e-61 238.4 166 68.7
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.2e-60 237.3 144 74.3
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.5e-60 236.9 162 67.3
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.5e-60 236.9 147 70.7
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 2.6e-60 236.1 148 72.3
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 5.9e-60 235.0 203 61.1
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 5.9e-60 235.0 226 56.6
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 7.7e-60 234.6 194 61.9
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.7e-59 233.4 186 60.2
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 2.9e-59 232.6 147 70.7
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.9e-59 232.6 147 70.7
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.5e-58 229.6 188 60.6
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.2e-57 227.3 161 64.6
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.1e-57 226.5 199 58.3
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 5.7e-55 218.4 125 77.6
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.2e-54 216.5 159 62.9
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 2.8e-54 216.1 124 76.6
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 3.7e-54 215.7 124 79.0
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.1e-53 214.2 176 61.9
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.1e-53 214.2 197 59.4
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 3.1e-53 212.6 147 66.0
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-52 210.3 189 56.1
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 2.9e-51 206.1 163 62.6
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.1e-50 204.1 208 53.4
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.1e-50 204.1 208 53.4
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 3.2e-50 202.6 142 62.7
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.2e-50 202.2 157 61.8
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.7e-49 199.5 113 80.5
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.8e-48 196.8 147 66.7
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.5e-47 193.7 125 69.6
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 2.6e-47 193.0 125 71.2
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 3.3e-47 192.6 150 56.0
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 1.1e-45 187.6 146 58.9
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 5.9e-44 181.8 139 62.6
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.3e-43 180.6 155 56.8
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.3e-43 180.6 144 58.3
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 6.5e-43 178.3 114 74.6
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 1.1e-42 177.6 147 57.8
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 1.2e-41 174.1 133 57.1
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.1e-41 173.3 100 76.0
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 8.0e-41 171.4 101 76.2
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.0e-40 171.0 141 60.3
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.8e-40 170.2 144 58.3
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 2.3e-40 169.9 106 74.5
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 2.3e-40 169.9 99 74.7
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 6.7e-40 168.3 108 70.4
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 7.5e-39 164.9 112 63.4
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 2.8e-38 162.9 108 65.7
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.1e-37 161.0 123 61.0
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.1e-37 161.0 123 61.0
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 8.5e-35 151.4 153 52.3
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 8.0e-33 144.8 134 56.0
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 4.4e-31 139.0 99 56.6
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.1e-26 124.4 119 51.3
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 3.2e-26 122.9 72 76.4
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 9.4e-26 121.3 72 75.0
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.6e-25 120.6 127 44.1
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 2.1e-25 120.2 72 75.0
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 6.1e-25 118.6 74 67.6
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 1.2e-23 114.4 68 73.5
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.7e-23 112.1 88 59.1
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 3.7e-22 109.4 75 60.0
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 2.4e-21 106.7 85 61.2
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 6.6e-19 98.6 63 69.8
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 5.6e-18 95.5 90 50.0
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 2.8e-17 93.2 64 65.6
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 1.0e-16 91.3 63 65.1
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.4e-16 90.9 58 70.7
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.4e-16 90.9 61 65.6
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 2.0e-15 87.0 73 56.2
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 1.8e-13 80.5 80 47.5
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 1.1e-10 71.2 63 57.1
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 3.4e-07 59.7 33 75.8
CARHR111710 Cardamine hirsuta HOM05D005182 ORTHO05D116377 4.9e-06 55.8 36 69.4


User provided reference genes

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