Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.6e-143 512.7 254 100.0
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.7e-106 389.0 254 77.6
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.7e-92 343.2 254 67.7
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.9e-91 339.7 253 67.6
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 1.1e-80 303.9 248 64.1
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 3.1e-78 295.8 249 63.1
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 1.4e-73 280.4 254 58.3
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.0e-65 254.2 244 54.1
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 5.2e-65 251.9 241 54.8
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 1.2e-64 250.8 244 54.5
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 4.4e-64 248.8 244 53.3
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 5.7e-64 248.4 244 53.3
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 5.7e-64 248.4 244 53.3
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 9.8e-64 247.7 243 53.5
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.3e-63 247.3 244 54.1
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 2.2e-63 246.5 244 54.1
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 3.7e-63 245.7 244 54.5
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 3.7e-63 245.7 244 52.9
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 3.7e-63 245.7 244 52.9
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 4.1e-62 242.3 244 53.3
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 4.1e-62 242.3 244 53.3
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 9.2e-62 241.1 241 54.4
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 9.2e-62 241.1 241 54.4
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 9.2e-62 241.1 241 54.4
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 3.5e-61 239.2 244 51.6
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.3e-60 237.3 244 51.2
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 6.1e-58 228.4 244 49.6
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 1.0e-57 227.6 244 50.4
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 4.0e-57 225.7 245 47.3
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 5.2e-57 225.3 245 46.5
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 6.8e-57 224.9 244 50.0
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 1.5e-56 223.8 244 48.8
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 7.5e-56 221.5 244 46.3
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 1.7e-55 220.3 244 47.1
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 1.7e-55 220.3 242 45.9
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 2.2e-55 219.9 244 45.5
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 2.9e-55 219.5 244 48.0
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 3.7e-55 219.2 239 46.0
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 6.4e-55 218.4 244 45.5
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 6.4e-55 218.4 244 46.3
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 8.3e-55 218.0 244 46.3
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.1e-54 217.6 244 45.5
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.4e-54 217.2 244 45.5
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.4e-54 217.2 239 44.8
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 1.4e-54 217.2 246 45.9
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 1.4e-54 217.2 244 43.4
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 1.8e-54 216.9 244 45.1
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 4.1e-54 215.7 244 44.3
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 7.0e-54 214.9 244 45.1
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 9.2e-54 214.5 246 47.2
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 1.2e-53 214.2 244 43.0
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 1.2e-53 214.2 244 45.9
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 1.6e-53 213.8 243 44.9
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 1.6e-53 213.8 244 46.3
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 1.6e-53 213.8 244 42.6
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.7e-53 213.0 244 45.5
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 3.5e-53 212.6 244 44.7
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 3.5e-53 212.6 246 44.3
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 3.5e-53 212.6 241 45.2
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 4.6e-53 212.2 247 44.9
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 5.9e-53 211.8 247 44.5
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 7.8e-53 211.5 249 44.2
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.0e-52 211.1 256 43.4
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 1.0e-52 211.1 244 45.1
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 1.0e-52 211.1 243 44.9
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.7e-52 210.3 244 45.5
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 3.0e-52 209.5 249 44.2
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 3.0e-52 209.5 244 43.0
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 3.0e-52 209.5 244 42.2
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 3.9e-52 209.1 245 43.7
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 5.0e-52 208.8 218 48.6
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 6.6e-52 208.4 237 44.3
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 8.6e-52 208.0 246 44.3
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 8.6e-52 208.0 245 46.5
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 1.1e-51 207.6 245 44.1
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 1.1e-51 207.6 241 44.0
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 1.5e-51 207.2 238 46.6
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 3.3e-51 206.1 246 44.3
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 3.3e-51 206.1 255 44.7
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 4.3e-51 205.7 244 43.4
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 4.3e-51 205.7 245 43.7
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 4.3e-51 205.7 236 45.3
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 4.3e-51 205.7 247 43.3
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 4.3e-51 205.7 237 44.3
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 7.3e-51 204.9 244 45.5
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 1.2e-50 204.1 244 45.1
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 1.2e-50 204.1 249 42.6
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.2e-50 204.1 245 41.2
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.8e-50 203.0 251 42.6
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 2.8e-50 203.0 244 43.4
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 3.6e-50 202.6 246 41.5
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 3.6e-50 202.6 234 44.0
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.7e-50 202.2 226 45.1
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 6.2e-50 201.8 248 43.5
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 6.2e-50 201.8 246 43.5
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 1.0e-49 201.1 244 43.4
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 3.1e-49 199.5 241 44.4
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 5.2e-49 198.7 267 39.3
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 8.9e-49 198.0 244 41.4
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 8.9e-49 198.0 241 43.2
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 1.2e-48 197.6 223 47.5
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 2.0e-48 196.8 244 42.2
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 2.0e-48 196.8 243 43.6
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 2.9e-47 193.0 253 40.3
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.1e-46 191.0 244 42.2
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 1.4e-46 190.7 256 40.6
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 2.4e-46 189.9 283 37.8
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 1.2e-45 187.6 246 39.4
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.2e-45 187.6 251 39.0
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 3.9e-44 182.6 241 41.9
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 1.1e-43 181.0 248 40.7
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 1.5e-43 180.6 244 40.2
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.3e-41 173.3 208 46.6
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 1.9e-35 153.7 388 30.4
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.2e-34 151.0 185 41.6
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 1.8e-33 147.1 253 35.6
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 3.1e-33 146.4 248 33.9
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 4.9e-31 139.0 165 43.0
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 2.4e-30 136.7 249 30.9
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 3.9e-28 129.4 243 31.3
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 8.6e-28 128.3 173 40.5
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 8.6e-28 128.3 158 40.5
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 1.6e-26 124.0 155 44.5
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 3.6e-26 122.9 101 54.5
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.0e-24 117.1 148 44.6
Sp1g35470 Schrenkiella parvula HOM05D005585 ORTHO05D006905 4.2e-22 109.4 91 72.5
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.3e-20 104.4 278 26.3
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 1.3e-20 104.4 88 53.4
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 2.6e-16 90.1 264 26.1
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 6.4e-15 85.5 121 40.5
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 3.3e-11 73.2 281 23.1
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 4.8e-10 69.3 76 43.4
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.1e-09 66.6 70 45.7
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.6e-08 63.5 65 50.8
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 9.3e-06 55.1 129 28.7


User provided reference genes

Program Settings