Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.4e-162 576.2 292 100.0
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-159 565.8 290 98.3
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 3.5e-158 561.6 285 98.6
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 3.5e-158 561.6 285 98.6
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 3.5e-158 561.6 285 98.6
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 6.0e-158 560.8 285 98.6
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.9e-157 558.1 288 97.2
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 6.6e-157 557.4 294 96.3
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 9.6e-156 553.5 292 95.2
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 9.6e-156 553.5 293 95.6
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.6e-155 551.6 293 94.5
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.4e-154 549.7 294 94.2
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-153 546.6 292 94.5
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.5e-153 546.2 288 96.2
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 4.9e-152 541.2 293 93.5
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 5.4e-151 537.7 294 92.5
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.6e-150 536.2 286 94.1
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.3e-149 533.1 296 90.5
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.5e-145 519.6 292 88.0
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 2.6e-145 518.8 293 87.4
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 2.2e-144 515.8 297 86.5
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.8e-144 515.0 297 86.5
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.4e-144 514.2 291 85.9
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.1e-143 513.5 294 86.1
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.4e-143 513.1 303 84.2
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.9e-143 512.7 299 84.9
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 2.4e-143 512.3 289 87.2
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.2e-143 511.9 294 85.4
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 4.2e-143 511.5 290 87.2
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.7e-142 508.8 295 85.8
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 4.6e-142 508.1 295 85.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.0e-141 506.9 300 83.7
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 1.0e-141 506.9 288 86.5
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.0e-141 506.9 289 85.8
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-141 506.5 296 84.5
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.9e-141 505.0 296 84.5
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 5.1e-141 504.6 296 84.5
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 8.7e-141 503.8 296 84.5
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.1e-140 503.4 298 83.6
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.5e-140 503.1 292 85.6
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.9e-140 502.7 295 85.4
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 3.3e-140 501.9 285 86.0
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 4.3e-140 501.5 273 89.7
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 4.3e-140 501.5 302 82.5
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 5.6e-140 501.1 295 82.7
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 7.4e-140 500.7 298 83.2
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 7.4e-140 500.7 302 82.8
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 9.6e-140 500.4 285 86.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.6e-139 499.6 307 81.8
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.1e-139 499.2 283 85.5
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.1e-139 499.2 283 85.5
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.7e-139 498.4 288 84.7
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 8.1e-139 497.3 300 82.3
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.4e-138 496.5 280 85.0
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.4e-138 495.7 298 82.2
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.4e-138 495.7 302 81.5
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 3.1e-138 495.4 292 84.6
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 3.1e-138 495.4 298 82.6
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 3.1e-138 495.4 300 83.7
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 4.0e-138 495.0 290 84.5
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 5.3e-138 494.6 280 85.0
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.3e-138 494.6 279 84.9
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 9.0e-138 493.8 298 81.9
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.2e-137 493.4 294 83.3
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.2e-137 493.4 297 83.2
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 2.0e-137 492.7 295 81.7
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 4.5e-137 491.5 303 80.5
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 4.5e-137 491.5 280 85.4
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 5.8e-137 491.1 280 83.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 7.6e-137 490.7 295 81.4
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.0e-136 490.3 287 83.3
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.0e-136 490.3 298 80.5
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.0e-136 490.3 282 84.0
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.2e-136 489.2 294 82.3
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.9e-136 488.8 294 81.3
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 2.9e-136 488.8 288 84.4
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 3.8e-136 488.4 285 82.8
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.8e-136 488.4 280 86.1
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.1e-135 486.9 288 84.0
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.1e-135 486.9 297 81.1
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.4e-135 486.5 305 81.6
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 5.5e-135 484.6 278 84.2
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 4.6e-134 481.5 298 80.2
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.8e-133 479.6 294 78.6
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 3.0e-133 478.8 290 81.0
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 6.7e-133 477.6 295 80.7
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 8.7e-133 477.2 294 79.9
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.9e-132 476.1 282 81.9
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 2.5e-132 475.7 283 87.6
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 7.4e-132 474.2 298 78.9
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.8e-131 472.2 290 79.0
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 3.7e-131 471.9 295 79.0
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 6.3e-131 471.1 292 80.8
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.8e-130 469.5 280 81.1
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.8e-130 469.5 288 80.6
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 2.4e-130 469.2 293 80.2
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 3.1e-130 468.8 280 84.6
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 4.1e-130 468.4 299 78.9
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 6.9e-130 467.6 311 76.8
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 5.9e-129 464.5 286 80.1
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 7.6e-129 464.2 265 84.5
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.0e-128 461.5 297 78.1
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.0e-128 461.5 290 79.3
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 6.5e-128 461.1 291 78.7
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.4e-127 459.9 285 79.3
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 9.3e-127 457.2 287 79.1
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.2e-126 456.8 288 77.4
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.2e-126 456.8 285 78.9
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.6e-126 456.4 281 79.4
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 3.6e-126 455.3 281 80.8
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 4.6e-126 454.9 289 77.9
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 7.9e-126 454.1 293 77.5
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 6.7e-125 451.1 289 78.5
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 7.4e-124 447.6 384 64.1
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 7.4e-124 447.6 302 74.2
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.8e-122 443.0 290 76.2
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.1e-122 441.8 261 83.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.1e-122 441.8 254 84.6
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 3.4e-121 438.7 326 70.2
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 5.9e-121 438.0 291 74.2
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 7.7e-121 437.6 298 74.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 8.5e-120 434.1 258 81.4
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 4.1e-114 415.2 249 81.9
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.5e-113 413.3 286 70.3
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 4.5e-113 411.8 221 89.1
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 5.9e-113 411.4 280 75.0
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 3.2e-111 405.6 262 76.3
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 5.5e-111 404.8 221 87.3
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.3e-109 399.4 218 87.2
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.3e-109 399.4 218 87.2
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 6.3e-107 391.3 250 75.2
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 8.5e-104 380.9 215 86.0
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.5e-103 380.2 251 72.9
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.5e-103 379.4 250 71.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.3e-100 369.0 296 66.6
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 7.5e-100 367.9 255 68.6
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 1.7e-99 366.7 200 87.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.8e-93 346.7 215 79.1
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.3e-91 340.5 182 89.0
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 2.4e-90 336.3 182 89.6
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.6e-86 323.6 208 77.4
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.6e-81 307.0 174 85.1
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 7.7e-81 304.7 189 80.4
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.8e-78 296.2 221 72.9
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 3.3e-71 272.7 152 85.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 7.0e-66 255.0 194 66.5
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 7.0e-66 255.0 209 68.9
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.3e-61 240.0 146 79.5
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 5.8e-52 208.8 119 82.4
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 9.2e-50 201.4 243 49.8
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 8.9e-45 184.9 158 61.4
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 2.0e-44 183.7 136 69.1
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 5.8e-44 182.2 105 81.9
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.2e-42 176.4 177 55.9
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 2.8e-38 163.3 96 80.2
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.4e-37 160.2 87 85.1
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 6.9e-37 158.7 91 93.4
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 4.3e-31 139.4 305 32.8
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.1e-30 137.1 88 75.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.6e-28 130.2 196 43.4
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 2.1e-25 120.6 66 90.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 2.1e-25 120.6 66 90.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 2.7e-25 120.2 170 42.4
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.4e-18 97.8 87 64.4
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.4e-18 97.8 87 64.4
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 7.9e-17 92.0 53 79.2
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 3.0e-16 90.1 158 38.0
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 5.7e-15 85.9 85 52.9
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 7.4e-15 85.5 80 56.2
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.1e-13 81.6 92 52.2
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.3e-13 79.3 82 58.5
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 4.5e-12 76.3 103 45.6
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.3e-11 74.7 59 64.4
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 1.7e-11 74.3 76 60.5
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.1e-10 71.6 110 39.1
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 3.0e-08 63.5 57 52.6
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.1e-07 61.6 43 72.1
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.6e-06 57.8 34 73.5
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 2.2e-06 57.4 53 54.7


User provided reference genes

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