Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011599m.g Eutrema salsugineum HOM05D006520 ORTHO05D008405 2.4e-193 678.7 362 100.0
AL1G58660 Arabidopsis lyrata HOM05D006520 ORTHO05D008405 3.7e-181 638.3 366 92.6
AT1G50940 Arabidopsis thaliana HOM05D006520 ORTHO05D008405 6.9e-180 634.0 364 92.3
Carub.0001s3988 Capsella rubella HOM05D006520 ORTHO05D008405 1.2e-179 633.3 366 92.6
BcaC01g01246 Brassica carinata HOM05D006520 ORTHO05D008405 1.2e-176 623.2 362 91.4
BolC3t21294H Brassica oleracea HOM05D006520 ORTHO05D008405 1.2e-176 623.2 362 91.4
C03p89710 Brassica napus HOM05D006520 ORTHO05D008405 2.7e-176 622.1 362 91.4
CARHR040980 Cardamine hirsuta HOM05D006520 ORTHO05D008405 3.6e-176 621.7 362 91.2
Sp1g37680 Schrenkiella parvula HOM05D006520 ORTHO05D008405 2.3e-175 619.0 363 92.3
BcaB04g17242 Brassica carinata HOM05D006520 ORTHO05D008405 7.4e-174 614.0 364 90.9
A08p03100 Brassica napus HOM05D006520 ORTHO05D008405 9.7e-174 613.6 362 90.6
BraA08t32341Z Brassica rapa HOM05D006520 ORTHO05D008405 3.7e-173 611.7 362 90.3
Aa31LG10G3340 Aethionema arabicum HOM05D006520 ORTHO05D008405 3.3e-166 588.6 362 85.9
THA.LOC104817880 Tarenaya hassleriana HOM05D006520 ORTHO05D008405 2.3e-159 565.8 362 80.9
Atru.chr2.3238 Acer truncatum HOM05D006520 ORTHO05D008405 1.3e-146 523.5 362 74.6
Thecc.07G046500 Theobroma cacao HOM05D006520 ORTHO05D008405 1.3e-146 523.5 361 73.7
Cpa.g.sc1133.1 Carica papaya HOM05D006520 ORTHO05D008405 1.7e-146 523.1 362 74.9
CiPaw.11G185500 Carya illinoinensis HOM05D006520 ORTHO05D008405 2.9e-146 522.3 362 75.7
QL08p012619 Quercus lobata HOM05D006520 ORTHO05D008405 1.9e-145 519.6 340 79.4
COL.COLO4_09604 Corchorus olitorius HOM05D006520 ORTHO05D008405 5.5e-145 518.1 362 73.2
Duzib213G0852 Durio zibethinus HOM05D006520 ORTHO05D008405 9.4e-145 517.3 361 74.2
Gohir.A01G076200 Gossypium hirsutum HOM05D006520 ORTHO05D008405 1.6e-144 516.5 362 74.3
Gorai.002G084200 Gossypium raimondii HOM05D006520 ORTHO05D008405 1.6e-144 516.5 362 74.3
FvH4_3g22000 Fragaria vesca HOM05D006520 ORTHO05D008405 2.7e-144 515.8 362 74.9
FAN21G1190 Fragaria x ananassa HOM05D006520 ORTHO05D008405 6.1e-144 514.6 362 74.6
TWI38G0825 Tripterygium wilfordii HOM05D006520 ORTHO05D008405 1.8e-143 513.1 357 74.5
Dinv22290 Davidia involucrata HOM05D006520 ORTHO05D008405 6.8e-143 511.1 338 77.2
FAN16G1768 Fragaria x ananassa HOM05D006520 ORTHO05D008405 6.8e-143 511.1 362 73.8
MD03G1209400 Malus domestica HOM05D006520 ORTHO05D008405 6.8e-143 511.1 355 75.5
RcHm_v2.0_Chr5g0037851 Rosa chinensis HOM05D006520 ORTHO05D008405 2.0e-142 509.6 362 74.6
Potri.011G135600 Populus trichocarpa HOM05D006520 ORTHO05D008405 2.8e-141 505.8 341 77.7
Cc05_g13380 Coffea canephora HOM05D006520 ORTHO05D008405 3.7e-141 505.4 343 76.1
TAR362G1255 Trochodendron aralioides HOM05D006520 ORTHO05D008405 3.7e-141 505.4 362 72.1
Ciclev10008777m.g Citrus clementina HOM05D006520 ORTHO05D008405 1.4e-140 503.4 362 71.8
GSVIVG01001984001 Vitis vinifera HOM05D006520 ORTHO05D008405 1.4e-140 503.4 362 72.9
Cfa020400 Carpinus fangiana HOM05D006520 ORTHO05D008405 1.8e-140 503.1 336 77.4
CSS0025953 Camellia sinensis var. sinensis HOM05D006520 ORTHO05D008405 2.4e-140 502.7 362 74.3
Sc16g0006360 Simmondsia chinensis HOM05D006520 ORTHO05D008405 3.1e-140 502.3 349 75.4
DCAR_010030 Daucus carota HOM05D006520 ORTHO05D008405 1.2e-139 500.4 336 76.2
Nn3g21422 Nelumbo nucifera HOM05D006520 ORTHO05D008405 1.6e-139 500.0 362 71.3
Sed0027741 Sechium edule HOM05D006520 ORTHO05D008405 2.0e-139 499.6 332 77.4
Lj8A167T45 Lonicera japonica HOM05D006520 ORTHO05D008405 2.7e-139 499.2 337 76.9
CANSAT35G1182 Cannabis sativa HOM05D006520 ORTHO05D008405 1.3e-138 496.9 362 74.0
Eucgr.F00972 Eucalyptus grandis HOM05D006520 ORTHO05D008405 1.7e-138 496.5 341 74.8
Haze_09634 Corylus avellana HOM05D006520 ORTHO05D008405 6.5e-138 494.6 376 70.7
PGR083G2407 Punica granatum HOM05D006520 ORTHO05D008405 8.5e-138 494.2 342 73.4
vmacro11755 Vaccinium macrocarpon HOM05D006520 ORTHO05D008405 8.5e-138 494.2 362 72.7
HanXRQChr08g0234071 Helianthus annuus HOM05D006520 ORTHO05D008405 3.2e-137 492.3 333 77.5
Oeu021407.1 Olea europaea HOM05D006520 ORTHO05D008405 3.2e-137 492.3 344 75.9
Nitab4.5_0000653g0110 Nicotiana tabacum HOM05D006520 ORTHO05D008405 9.5e-137 490.7 345 74.8
Nitab4.5_0004600g0010 Nicotiana tabacum HOM05D006520 ORTHO05D008405 2.8e-136 489.2 345 74.2
Hund18268 Selenicereus undatus HOM05D006520 ORTHO05D008405 3.6e-136 488.8 340 74.1
Migut.M01795 Erythranthe guttata HOM05D006520 ORTHO05D008405 4.7e-136 488.4 341 74.8
Prupe.4G205700 Prunus persica HOM05D006520 ORTHO05D008405 4.7e-136 488.4 362 71.5
CsaV3_3G023150 Cucumis sativus L. HOM05D006520 ORTHO05D008405 1.8e-135 486.5 353 71.7
Sabra11G0121700 Salix brachista HOM05D006520 ORTHO05D008405 1.8e-135 486.5 378 69.6
Sabra11G0121400 Salix brachista HOM05D006520 ORTHO05D008405 8.8e-135 484.2 374 70.1
Aqoxy5G00708 Aquilegia oxysepala HOM05D006520 ORTHO05D008405 1.2e-134 483.8 362 69.9
ECA246G0715 Erigeron canadensis HOM05D006520 ORTHO05D008405 2.0e-134 483.0 338 74.3
PSO832G0135 Papaver somniferum HOM05D006520 ORTHO05D008405 2.0e-134 483.0 362 71.8
MELO3C018098.2 Cucumis melo HOM05D006520 ORTHO05D008405 3.4e-134 482.3 353 70.8
Lj3g0004956 Lotus japonicus HOM05D006520 ORTHO05D008405 4.4e-134 481.9 363 70.0
Solyc12g005200.3 Solanum lycopersicum HOM05D006520 ORTHO05D008405 5.7e-134 481.5 333 76.3
Glyma.06G270300 Glycine max HOM05D006520 ORTHO05D008405 7.5e-134 481.1 330 75.8
Lalb_Chr03g0030081 Lupinus albus HOM05D006520 ORTHO05D008405 1.3e-133 480.3 360 71.4
PGSC0003DMG400001100 Solanum tuberosum HOM05D006520 ORTHO05D008405 1.3e-133 480.3 333 76.3
PSO210G5695 Papaver somniferum HOM05D006520 ORTHO05D008405 1.7e-133 479.9 362 71.3
Sopen12g001190 Solanum pennellii HOM05D006520 ORTHO05D008405 4.9e-133 478.4 333 76.0
SGA_v2.0_scaffold258G45796 Striga asiatica HOM05D006520 ORTHO05D008405 6.3e-133 478.0 348 72.1
arahy.Tifrunner.gnm1.ann1.45MNV2 Arachis hypogaea HOM05D006520 ORTHO05D008405 8.3e-133 477.6 363 70.5
Ah.06g182970 Amaranthus hybridus HOM05D006520 ORTHO05D008405 5.4e-132 474.9 339 71.7
CAN.G315.8 Capsicum annuum HOM05D006520 ORTHO05D008405 7.0e-132 474.6 345 73.0
Peaxi162Scf01097g00110 Petunia axillaris HOM05D006520 ORTHO05D008405 1.2e-131 473.8 345 73.3
Ca_18859_v3 Cicer arietinum L. HOM05D006520 ORTHO05D008405 2.7e-131 472.6 364 70.9
AUR62043225 Chenopodium quinoa HOM05D006520 ORTHO05D008405 4.5e-131 471.9 360 68.3
Medtr4g080790 Medicago truncatula HOM05D006520 ORTHO05D008405 1.0e-130 470.7 363 70.5
Lsat_1_v5_gn_7_65980 Lactuca sativa HOM05D006520 ORTHO05D008405 2.3e-130 469.5 359 69.9
AUR62020529 Chenopodium quinoa HOM05D006520 ORTHO05D008405 2.5e-129 466.1 346 69.1
VMungo1127G1053 Vigna mungo HOM05D006520 ORTHO05D008405 3.6e-128 462.2 330 74.5
Phvul.011G139475 Phaseolus vulgaris HOM05D006520 ORTHO05D008405 1.4e-127 460.3 330 73.6
ClCG05G014620 Citrullus lanatus HOM05D006520 ORTHO05D008405 4.4e-126 455.3 362 67.4
ATR0706G183 Amborella trichopoda HOM05D006520 ORTHO05D008405 2.9e-125 452.6 334 68.3
Psat7g163040 Pisum sativum HOM05D006520 ORTHO05D008405 8.3e-125 451.1 362 68.8
TPR.G25908 Trifolium pratense HOM05D006520 ORTHO05D008405 7.8e-123 444.5 298 77.2
HPP92_026253 Vanilla planifolia HOM05D006520 ORTHO05D008405 1.5e-121 440.3 330 67.9
Os03g0835400 Oryza sativa ssp. japonica HOM05D006520 ORTHO05D008405 1.9e-121 439.9 360 65.3
Manes.15G075200 Manihot esculenta HOM05D006520 ORTHO05D008405 3.3e-121 439.1 269 81.8
EL10Ac4g07934 Beta vulgaris HOM05D006520 ORTHO05D008405 2.8e-120 436.0 340 67.9
Actinidia09928 Actinidia chinensis HOM05D006520 ORTHO05D008405 8.9e-119 431.0 269 79.9
Pp3c15_18640 Physcomitrium patens HOM05D006520 ORTHO05D008405 8.6e-114 414.5 331 61.9
Mapoly0055s0094 Marchantia polymorpha HOM05D006520 ORTHO05D008405 4.3e-113 412.1 331 61.6
Gohir.D01G063700 Gossypium hirsutum HOM05D006520 ORTHO05D008405 1.9e-105 386.7 296 68.2
SHI31861 Sapria himalayana HOM05D006520 ORTHO05D008405 4.7e-104 382.1 358 59.8
SMO169G0265 Selaginella moellendorffii HOM05D006520 ORTHO05D008405 3.8e-101 372.5 334 58.7
CiPaw.11G185700 Carya illinoinensis HOM05D006520 ORTHO05D008405 2.0e-86 323.6 290 63.1
SalBow6G5624 Salvia bowleyana HOM05D006520 ORTHO05D008405 7.1e-84 315.1 272 65.4
Cre16.g687950 Chlamydomonas reinhardtii HOM05D006520 ORTHO05D008405 7.4e-73 278.5 342 47.7
TAR362G0323 Trochodendron aralioides HOM05D000062 ORTHO05D000043 1.4e-71 274.2 272 56.6
Zm00001eb063680 Zea mays HOM05D006520 ORTHO05D008405 1.5e-70 270.8 245 58.4
Haze_27296 Corylus avellana HOM05D006520 ORTHO05D008405 1.0e-69 268.1 345 45.5
CDE01G0592 Ceratophyllum demersum HOM05D006520 ORTHO05D008405 4.9e-69 265.8 228 65.4
PRCOL_00001901 Prasinoderma coloniale HOM05D006520 ORTHO05D008405 3.3e-65 253.1 305 48.2
CsaV3_3G025180 Cucumis sativus L. HOM05D006520 ORTHO05D008405 4.5e-62 242.7 155 80.6
Cfa027367 Carpinus fangiana HOM05D006520 ORTHO05D008405 1.3e-61 241.1 333 45.0
arahy.Tifrunner.gnm1.ann1.3QT6IB Arachis hypogaea HOM05D006520 ORTHO05D008405 2.9e-61 240.0 363 45.5
CsaV3_3G025190 Cucumis sativus L. HOM05D006520 ORTHO05D008405 2.7e-59 233.4 191 63.9
unitig_62.g23270 Utricularia gibba HOM05D006520 ORTHO05D008405 1.9e-57 227.3 208 59.1
CsaV3_UNG094710 Cucumis sativus L. HOM05D006520 ORTHO05D008405 2.6e-54 216.9 186 65.1
AagrBONN_evm.TU.Sc2ySwM_228.3593 Anthoceros agrestis HOM05D006520 ORTHO05D008405 2.4e-47 193.7 176 55.7
SEGI_24363 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 2.1e-43 180.6 152 57.2
Glyma.12G134400 Glycine max HOM05D006520 ORTHO05D008405 3.9e-42 176.4 140 65.0
Haze_27029 Corylus avellana HOM05D006520 ORTHO05D008405 3.3e-41 173.3 264 42.4
SEGI_31254 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 7.0e-39 165.6 91 92.3
CsaV3_UNG094720 Cucumis sativus L. HOM05D006520 ORTHO05D008405 2.1e-35 154.1 114 67.5
Pp3c15_18800 Physcomitrium patens HOM05D006520 ORTHO05D008405 7.0e-31 139.0 133 57.1
unitig_62.g23271 Utricularia gibba HOM05D006520 ORTHO05D008405 1.8e-23 114.4 66 84.8
CDE01G0120 Ceratophyllum demersum HOM05D006520 ORTHO05D008405 6.5e-21 105.9 57 91.2
SEGI_23300 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 8.9e-18 95.5 88 55.7
Actinidia27215 Actinidia chinensis HOM05D006520 ORTHO05D008405 1.5e-17 94.7 105 54.3
EL10Ac4g08085 Beta vulgaris HOM05D006520 ORTHO05D090166 8.6e-13 79.0 43 90.7
MD11G1224100 Malus domestica HOM05D006520 ORTHO05D008405 3.3e-12 77.0 46 82.6
C06p06150 Brassica napus HOM05D047594 ORTHO05D040577 4.1e-07 60.1 35 85.7
BolC6t35726H Brassica oleracea HOM05D047594 ORTHO05D040577 4.1e-07 60.1 35 85.7
Zm00001eb241410 Zea mays HOM05D006520 ORTHO05D442212 5.4e-07 59.7 50 62.0


User provided reference genes

Program Settings