Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 1.4e-218 762.7 393 100.0
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 2.1e-182 642.5 378 87.3
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 6.1e-182 641.0 380 86.8
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 3.7e-179 631.7 380 86.1
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.4e-178 629.0 396 82.1
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 4.6e-177 624.8 376 85.1
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 9.8e-172 607.1 379 82.6
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 6.4e-171 604.4 379 82.6
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 4.1e-170 601.7 379 82.3
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 1.6e-169 599.7 379 81.8
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 7.8e-169 597.4 379 82.1
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 5.0e-168 594.7 379 81.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.0e-165 585.1 374 80.2
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 1.8e-157 559.7 401 75.3
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.2e-150 537.0 396 70.5
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 6.0e-145 518.1 326 82.8
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 3.4e-132 475.7 351 75.5
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 3.2e-114 416.0 388 56.2
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.2e-113 414.1 387 55.0
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 1.8e-112 410.2 387 56.1
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.9e-111 406.8 387 55.6
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 2.5e-111 406.4 388 55.9
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.5e-111 406.4 389 53.7
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 4.3e-111 405.6 389 56.6
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 7.4e-111 404.8 389 53.5
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 9.7e-111 404.4 390 55.6
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 3.7e-110 402.5 390 56.2
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 3.7e-110 402.5 388 54.4
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 8.2e-110 401.4 383 56.7
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 4.1e-109 399.1 378 54.8
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 5.3e-109 398.7 388 54.6
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 6.9e-109 398.3 389 54.8
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 1.2e-108 397.5 388 52.6
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 2.6e-108 396.4 388 54.4
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 3.4e-108 396.0 395 52.4
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 5.9e-108 395.2 397 52.9
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 5.9e-108 395.2 386 54.1
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 2.2e-107 393.3 388 52.8
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 5.0e-107 392.1 386 53.9
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.4e-106 390.6 390 52.6
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 1.9e-106 390.2 391 52.7
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.2e-106 389.4 389 53.2
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 9.4e-106 387.9 381 53.0
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 2.1e-105 386.7 418 51.2
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 3.6e-105 386.0 386 54.1
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 3.6e-105 386.0 388 52.1
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.6e-105 385.6 384 52.1
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 6.1e-105 385.2 391 52.9
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 6.1e-105 385.2 381 52.8
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 7.9e-105 384.8 387 54.0
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 7.9e-105 384.8 396 53.0
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.0e-104 384.4 365 54.2
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.0e-104 384.4 379 52.8
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.0e-104 384.4 390 51.5
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.0e-104 384.4 381 53.0
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 1.4e-104 384.0 390 51.5
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 2.3e-104 383.3 390 50.0
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 2.3e-104 383.3 381 52.2
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 5.1e-104 382.1 390 52.3
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.0e-103 380.2 388 52.3
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 2.6e-103 379.8 383 52.2
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 4.4e-103 379.0 382 52.9
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 5.7e-103 378.6 359 56.5
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 7.4e-103 378.3 388 50.5
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 2.8e-102 376.3 388 50.5
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 3.8e-99 365.9 398 51.0
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.4e-98 364.0 384 49.7
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 4.2e-98 362.5 377 50.9
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 5.5e-98 362.1 392 50.5
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 7.2e-98 361.7 380 50.5
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 7.2e-98 361.7 384 49.0
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 9.4e-98 361.3 396 47.5
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.6e-97 360.5 258 75.2
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 6.1e-97 358.6 392 49.7
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 2.3e-96 356.7 378 49.7
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.0e-96 356.3 368 50.5
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 3.9e-96 355.9 405 47.7
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 1.1e-95 354.4 372 51.1
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.1e-95 354.4 391 48.8
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 1.5e-95 354.0 383 48.3
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 3.3e-95 352.8 383 49.6
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.3e-95 352.8 390 49.5
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 7.4e-95 351.7 412 47.8
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.6e-92 343.2 389 47.8
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 3.5e-92 342.8 385 50.1
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 2.1e-89 333.6 361 49.0
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.4e-88 330.9 315 55.2
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 6.7e-88 328.6 374 51.1
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 6.7e-88 328.6 380 47.4
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 3.3e-87 326.2 406 45.3
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 9.7e-87 324.7 382 47.6
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.1e-85 318.2 334 51.8
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.7e-84 316.6 309 52.8
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 5.9e-84 315.5 334 52.1
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 1.0e-83 314.7 384 46.9
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 8.8e-80 301.6 381 43.0
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.0e-79 300.4 288 53.8
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.4e-79 299.7 378 43.9
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 2.4e-77 293.5 283 54.8
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 5.0e-75 285.8 188 80.9
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 1.3e-70 271.2 182 79.7
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 1.3e-70 271.2 182 79.7
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 2.3e-67 260.4 355 43.1
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 5.0e-67 259.2 378 41.5
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 4.3e-66 256.1 319 44.5
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 9.5e-66 255.0 363 41.3
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.0e-63 247.3 346 42.2
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.4e-61 241.1 313 42.8
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 9.2e-61 238.4 380 37.4
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 2.0e-55 220.7 394 35.5
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 5.6e-50 202.6 325 38.8
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 9.2e-45 185.3 123 77.2
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 3.6e-41 173.3 205 46.3
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.3e-35 154.8 202 43.6
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.7e-35 154.5 177 50.8
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.1e-34 151.8 148 51.4
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 9.9e-31 138.7 366 31.7
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 1.2e-28 131.7 323 30.3
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 4.6e-28 129.8 197 42.1
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.9e-26 124.4 161 43.5
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 9.9e-23 112.1 111 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.7e-22 111.3 118 46.6
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.5e-18 97.4 159 41.5
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 1.3e-17 95.1 356 23.9
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.1e-13 82.0 82 54.9
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.9e-13 81.3 73 53.4
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 9.3e-13 79.0 72 51.4
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.9e-11 73.6 61 57.4
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.3e-10 70.5 61 54.1
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 7.4e-10 69.3 70 48.6
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 7.4e-10 69.3 70 48.6
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 8.2e-09 65.9 62 53.2


User provided reference genes

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