Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 3.0e-249 864.8 447 100.0
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 2.8e-223 778.5 452 90.0
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 1.2e-218 763.1 443 88.3
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 9.7e-216 753.4 442 88.5
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 6.9e-214 747.3 448 87.7
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 6.9e-214 747.3 448 87.7
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 4.5e-213 744.6 452 87.4
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 2.2e-212 742.3 447 85.2
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 2.9e-212 741.9 454 85.5
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 9.7e-200 700.3 388 89.7
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 4.8e-199 698.0 446 79.1
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 6.5e-188 661.0 442 72.6
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 4.2e-187 658.3 462 79.0
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 2.0e-184 649.4 437 73.5
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 8.2e-183 644.0 442 71.7
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.4e-182 642.5 424 73.8
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 2.4e-182 642.5 424 73.8
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 4.1e-182 641.7 435 72.0
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 1.2e-181 640.2 419 75.2
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 1.2e-181 640.2 441 71.0
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 3.5e-181 638.6 427 73.5
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 5.9e-181 637.9 453 69.5
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 7.7e-181 637.5 437 72.1
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 8.5e-180 634.0 438 71.2
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 2.5e-179 632.5 438 71.0
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 2.1e-178 629.4 437 70.3
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 4.7e-178 628.2 425 72.2
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.0e-177 627.1 444 69.8
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.0e-177 627.1 438 68.9
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 1.4e-177 626.7 444 68.2
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.8e-177 626.3 438 69.9
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 4.0e-177 625.2 425 72.0
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 1.5e-176 623.2 443 70.0
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 4.4e-176 621.7 435 68.5
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 5.7e-176 621.3 427 71.2
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 1.3e-175 620.2 407 73.0
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 1.1e-174 617.1 433 70.9
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.4e-174 616.7 436 69.0
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.4e-174 616.7 427 69.8
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 5.4e-174 614.8 449 69.7
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 9.1e-174 614.0 408 71.1
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 2.0e-173 612.8 425 69.9
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 5.9e-173 611.3 408 71.8
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 5.0e-172 608.2 425 68.7
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 5.0e-172 608.2 427 69.3
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 4.2e-171 605.1 425 69.4
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 5.5e-171 604.7 423 69.5
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 2.1e-170 602.8 430 70.0
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 4.7e-170 601.7 388 74.2
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 5.7e-168 594.7 457 65.2
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 4.9e-167 591.7 433 66.3
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 1.1e-166 590.5 386 73.6
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 5.9e-165 584.7 406 68.5
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 7.3e-163 577.8 395 71.1
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 5.2e-161 571.6 430 66.0
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 3.2e-158 562.4 537 55.3
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 3.2e-158 562.4 428 63.6
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 3.6e-154 548.9 412 66.7
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.9e-150 536.6 638 47.5
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.1e-149 533.1 423 65.0
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 4.6e-149 531.9 347 73.8
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 2.5e-147 526.2 450 61.6
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 9.5e-147 524.2 366 67.5
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.6e-146 523.5 445 61.6
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.6e-144 516.2 441 60.8
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.4e-142 510.4 451 58.3
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.4e-142 510.4 440 60.5
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 2.4e-142 509.6 426 59.9
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 7.8e-141 504.6 341 71.0
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 1.0e-140 504.2 414 58.0
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 3.9e-140 502.3 351 70.1
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 5.1e-140 501.9 365 67.7
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 9.5e-139 497.7 548 49.8
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 3.1e-137 492.7 429 55.9
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 4.0e-137 492.3 443 59.1
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.2e-134 482.6 422 59.5
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 5.4e-134 481.9 415 56.4
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 9.2e-134 481.1 321 73.2
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 2.1e-133 479.9 428 56.3
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 2.7e-133 479.6 346 66.8
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 3.3e-123 446.0 284 84.2
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 4.9e-119 432.2 434 55.3
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 6.4e-119 431.8 476 50.8
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 2.3e-116 423.3 282 73.8
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 1.7e-111 407.1 277 69.3
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 3.8e-111 406.0 283 71.0
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 4.6e-109 399.1 289 68.9
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 2.1e-106 390.2 278 68.3
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 1.7e-103 380.6 441 46.5
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 1.1e-99 367.9 229 82.5
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 9.1e-89 331.6 301 55.5
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 5.0e-87 325.9 428 41.4
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.8e-84 317.4 316 52.8
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.0e-79 301.6 456 39.3
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 9.7e-75 285.0 214 66.4
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 4.4e-67 259.6 172 75.6
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 2.5e-62 243.8 199 59.8
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 4.9e-50 203.0 146 68.5
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 5.0e-47 193.0 120 75.0
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.5e-46 190.7 416 30.8
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.3e-42 178.3 138 60.1
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 1.0e-39 168.7 115 70.4
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 2.5e-38 164.1 101 76.2
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 2.3e-36 157.5 103 73.8
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 1.9e-33 147.9 104 73.1
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 1.9e-33 147.9 104 73.1
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 6.6e-31 139.4 75 85.3
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 9.5e-30 135.6 108 63.9
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.2e-19 102.1 62 71.0
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 9.6e-14 82.4 205 26.3
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 7.6e-11 72.8 53 60.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.2e-10 71.2 47 76.6
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 3.2e-09 67.4 46 71.7
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 8.7e-07 59.3 42 64.3


User provided reference genes

Program Settings