Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 0.0e+00 1251.1 667 100.0
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 0.0e+00 1174.5 649 93.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 0.0e+00 1154.0 647 92.1
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 0.0e+00 1136.7 647 90.9
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 0.0e+00 1135.6 649 91.1
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 0.0e+00 1133.2 649 91.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 0.0e+00 1132.1 667 90.6
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 0.0e+00 1132.1 667 90.6
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 0.0e+00 1117.8 649 89.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 0.0e+00 1110.9 647 89.2
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 0.0e+00 1109.0 655 90.5
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 0.0e+00 1106.7 655 90.1
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.5e-308 1061.6 653 85.0
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 4.9e-264 914.4 655 73.7
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.7e-232 809.7 648 64.7
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 6.4e-232 807.7 650 65.4
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 6.4e-232 807.7 661 64.8
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 3.2e-231 805.4 652 65.3
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.8e-229 799.7 655 64.4
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.0e-229 798.9 655 64.4
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 6.7e-229 797.7 657 63.6
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 4.3e-228 795.0 659 64.2
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.1e-227 792.7 652 62.7
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.7e-227 792.0 649 63.8
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 6.9e-226 787.7 644 64.6
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.9e-224 782.3 644 62.3
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.1e-223 780.4 660 60.9
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 4.6e-222 775.0 688 60.0
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 6.0e-222 774.6 643 63.1
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 6.0e-222 774.6 688 60.5
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.3e-221 772.7 654 62.4
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 3.9e-221 771.9 644 62.0
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.1e-221 771.5 655 61.1
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.9e-220 769.6 642 61.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.5e-220 769.2 662 61.9
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.3e-220 768.8 642 62.8
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 9.6e-220 767.3 642 62.6
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 2.8e-219 765.8 640 62.2
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.8e-219 765.0 635 63.3
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 6.2e-219 764.6 644 61.0
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 2.4e-218 762.7 655 61.7
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 5.3e-218 761.5 643 60.3
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.3e-218 761.5 641 61.5
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 6.9e-218 761.1 643 61.7
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-217 760.0 643 60.3
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 5.8e-217 758.1 647 61.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.3e-216 756.9 647 61.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.9e-216 755.7 656 62.5
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.9e-215 753.1 643 60.3
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 3.2e-215 752.3 643 60.0
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.2e-215 751.9 649 61.5
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 9.3e-215 750.7 647 61.5
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.2e-214 750.4 643 60.0
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.5e-214 748.8 647 61.1
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 6.1e-214 748.0 651 58.8
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.9e-213 745.3 623 61.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.3e-212 742.3 647 60.6
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 7.4e-212 741.1 644 59.6
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 9.7e-212 740.7 644 60.1
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.2e-211 739.6 648 60.3
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 8.2e-211 737.6 643 59.1
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-210 737.3 643 59.1
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 9.0e-210 734.2 648 58.0
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-209 733.8 634 61.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.2e-208 729.6 652 58.9
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 5.5e-207 724.9 649 58.4
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 5.5e-207 724.9 643 58.2
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.6e-206 722.2 652 59.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.0e-205 720.7 674 56.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.3e-205 719.5 652 57.7
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 3.3e-204 715.7 643 58.3
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.3e-204 715.7 643 59.7
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 5.7e-204 714.9 656 57.6
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 6.5e-200 701.4 659 56.9
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 8.5e-200 701.0 659 56.9
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 3.2e-199 699.1 640 56.6
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 2.1e-198 696.4 611 60.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.8e-197 693.3 654 57.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 8.8e-197 691.0 640 56.4
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.3e-196 689.1 590 59.5
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 3.3e-196 689.1 634 56.2
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 8.2e-195 684.5 643 54.3
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.1e-194 684.1 640 56.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.5e-193 680.2 647 57.0
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.5e-193 679.1 665 55.3
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.2e-192 676.4 641 56.3
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.8e-192 675.6 648 53.7
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.0e-192 675.2 636 55.2
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 5.5e-191 671.8 555 63.4
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.6e-190 669.1 647 57.5
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.4e-186 657.1 701 52.1
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.1e-186 655.6 649 52.5
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 5.9e-185 651.7 656 53.5
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.1e-182 643.3 537 61.1
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 2.6e-180 636.3 543 60.0
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.8e-179 632.9 643 53.8
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.4e-178 630.6 648 51.5
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 3.2e-175 619.4 648 51.1
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 2.0e-172 610.1 624 55.9
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 3.1e-170 602.8 649 51.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 2.2e-163 580.1 532 55.6
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.7e-163 579.3 648 48.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.2e-161 574.3 577 54.6
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.3e-160 570.1 637 50.4
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 8.6e-160 568.2 551 55.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 6.2e-158 562.0 660 47.6
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 7.5e-156 555.1 538 53.2
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.1e-154 549.3 645 46.4
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.7e-152 543.9 513 56.1
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.3e-147 527.7 645 46.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 8.6e-144 515.0 610 53.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.3e-136 491.1 642 43.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.8e-133 480.7 665 42.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 5.8e-132 475.7 639 42.9
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 7.6e-132 475.3 639 42.9
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.2e-131 473.8 436 58.7
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.3e-123 448.0 638 42.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.7e-123 447.6 643 39.5
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.9e-122 444.1 400 58.0
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.3e-120 438.0 397 59.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.2e-115 420.6 383 65.0
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-113 414.1 390 55.9
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 6.5e-107 392.5 609 46.0
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 7.9e-89 332.4 306 64.7
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 3.8e-83 313.5 293 63.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.0e-72 277.3 245 57.1
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.7e-71 272.3 201 68.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.2e-70 271.2 434 40.1
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 8.2e-70 269.2 251 56.2
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 7.7e-68 262.7 432 38.9
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 6.5e-67 259.6 189 73.5
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.2e-65 255.4 258 59.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 6.5e-59 233.0 234 53.4
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-46 191.8 201 52.2
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 2.3e-40 171.4 253 42.3
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.0e-36 158.3 166 49.4
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.5e-34 149.4 237 42.2
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-33 148.7 181 47.5
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 4.4e-31 140.6 604 25.3
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.4e-31 140.6 158 50.0
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 4.9e-30 137.1 108 63.0
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.3e-26 123.2 110 59.1
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 9.5e-26 122.9 98 62.2
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.2e-22 111.7 74 78.4
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-21 109.0 91 64.8
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.0e-19 102.8 75 69.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.7e-19 102.1 96 56.2
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-16 91.7 83 55.4
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.2e-16 90.5 140 41.4
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.2e-16 90.5 83 56.6
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 4.4e-15 87.4 88 53.4
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 5.8e-15 87.0 80 55.0
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 9.9e-15 86.3 88 48.9
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.2e-13 80.9 68 57.4
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.3e-13 79.7 66 59.1
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 3.5e-12 77.8 52 75.0
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 7.8e-12 76.6 68 61.8
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 1.0e-11 76.3 65 63.1
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 1.0e-11 76.3 65 63.1
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 3.9e-11 74.3 93 48.4
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 6.6e-11 73.6 51 76.5
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 6.6e-11 73.6 63 57.1
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-09 68.9 70 47.1
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-09 68.6 64 56.2
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 3.1e-08 64.7 65 47.7
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 2.6e-07 61.6 194 26.8
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 4.5e-07 60.8 55 47.3
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 4.9e-06 57.4 41 68.3


User provided reference genes

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