Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 0.0e+00 1771.9 920 100.0
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 0.0e+00 1426.0 927 81.9
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 0.0e+00 1403.3 928 80.0
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 0.0e+00 1388.6 926 79.5
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 0.0e+00 1352.0 947 77.3
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 0.0e+00 1350.1 939 77.1
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 0.0e+00 1323.1 935 76.4
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 0.0e+00 1312.0 933 76.0
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 0.0e+00 1295.4 938 75.4
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 0.0e+00 1288.9 917 75.8
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 0.0e+00 1256.9 852 79.0
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 0.0e+00 1195.6 928 70.8
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 0.0e+00 1099.7 928 65.0
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 1.3e-246 857.1 929 51.6
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 4.8e-246 855.1 926 51.8
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.3e-243 847.0 926 51.6
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.7e-243 846.7 926 51.8
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 1.1e-242 844.0 930 51.3
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 4.7e-241 838.6 928 51.7
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 4.7e-241 838.6 941 49.6
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 1.4e-240 837.0 932 51.0
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 1.7e-238 830.1 898 51.8
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 2.2e-238 829.7 930 50.0
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 3.2e-237 825.9 927 50.8
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 2.1e-233 813.1 894 51.3
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 8.0e-233 811.2 930 48.7
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 6.8e-232 808.1 973 49.6
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 4.4e-231 805.4 934 49.0
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 5.8e-231 805.1 933 49.1
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 8.3e-230 801.2 949 48.2
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 1.9e-229 800.0 926 49.2
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 2.8e-225 786.2 948 48.2
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 6.8e-224 781.6 921 48.8
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 5.8e-223 778.5 925 49.0
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 2.2e-222 776.5 908 48.9
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 8.3e-222 774.6 932 47.1
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 2.1e-220 770.0 884 50.1
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 3.5e-220 769.2 922 47.7
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 6.0e-220 768.5 920 47.5
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 1.7e-219 766.9 906 49.0
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 1.7e-219 766.9 982 45.6
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 3.0e-219 766.1 931 47.0
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 6.6e-219 765.0 923 48.1
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 5.6e-218 761.9 917 48.0
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 2.8e-217 759.6 882 50.2
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 6.2e-217 758.4 920 46.6
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 2.3e-216 756.5 910 48.1
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 2.3e-216 756.5 919 47.0
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 2.9e-214 749.6 932 45.4
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 8.3e-214 748.0 793 51.8
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 7.1e-213 745.0 923 46.6
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 4.6e-212 742.3 929 47.0
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 6.0e-212 741.9 929 46.8
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 3.0e-211 739.6 750 53.3
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 1.1e-210 737.6 930 44.9
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.5e-210 737.3 938 45.2
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 2.5e-210 736.5 926 44.5
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 5.8e-207 725.3 881 44.9
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 6.0e-204 715.3 943 44.3
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 1.7e-203 713.8 932 45.9
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 1.7e-203 713.8 931 45.4
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 2.3e-203 713.4 939 44.6
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 1.1e-202 711.1 1014 43.9
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 1.5e-202 710.7 925 45.4
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 8.1e-201 704.9 912 44.8
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 4.4e-199 699.1 932 42.8
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 4.9e-198 695.7 938 43.8
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 2.1e-196 690.3 927 45.3
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 8.4e-190 668.3 917 43.5
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 3.2e-189 666.4 814 46.9
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 3.5e-188 662.9 969 42.7
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 2.3e-187 660.2 774 47.9
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 1.5e-183 647.5 761 49.4
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 1.4e-181 641.0 944 42.3
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 4.2e-165 586.3 849 42.6
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.4e-163 581.3 912 40.7
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 5.7e-162 575.9 664 50.5
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 1.4e-155 554.7 674 47.2
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 5.3e-152 542.7 881 38.4
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 3.0e-131 473.8 983 35.7
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 3.3e-125 453.8 1001 34.3
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 4.3e-125 453.4 883 35.1
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 2.1e-124 451.1 888 34.1
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 2.1e-116 424.5 924 32.0
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 1.0e-102 379.0 520 44.4
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 3.6e-100 370.5 420 49.3
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 2.2e-97 361.3 875 31.3
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 2.9e-97 360.9 516 43.0
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 2.9e-97 360.9 379 52.8
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 5.8e-90 336.7 531 41.2
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 2.1e-84 318.2 455 44.0
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 4.9e-81 307.0 561 37.8
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 6.6e-78 296.6 503 40.4
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 3.6e-76 290.8 316 51.3
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.1e-75 289.3 407 41.0
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 3.4e-74 284.3 667 32.7
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 1.3e-65 255.8 445 35.5
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 7.9e-63 246.5 389 40.4
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 3.7e-60 237.7 382 41.4
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.7e-55 221.5 296 42.9
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.8e-46 192.2 204 46.6
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 1.3e-44 186.0 232 46.6
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 9.1e-43 179.9 174 52.9
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 2.5e-40 171.8 416 30.5
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 2.6e-37 161.8 196 41.8
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.7e-36 159.1 171 48.5
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 4.2e-32 144.4 251 37.8
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 3.6e-31 141.4 186 45.2
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 3.6e-31 141.4 186 45.2
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 2.8e-28 131.7 151 43.7
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.1e-27 129.8 179 41.9
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.1e-27 129.8 191 40.8
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 1.7e-25 122.5 208 37.5
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 1.7e-25 122.5 208 37.5
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 3.2e-24 118.2 142 44.4
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 1.3e-20 106.3 96 53.1
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 4.8e-20 104.4 101 52.5
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.6e-18 99.4 129 41.9
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 2.7e-18 98.6 86 53.5
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 2.7e-18 98.6 86 53.5
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.0e-17 96.7 75 62.7
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 2.2e-17 95.5 74 60.8
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 3.8e-17 94.7 114 40.4
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 1.1e-16 93.2 72 61.1
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 1.5e-16 92.8 94 48.9
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 2.1e-15 89.0 84 53.6
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 8.8e-14 83.6 189 34.4
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 1.2e-13 83.2 89 39.3
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 1.2e-13 83.2 99 48.5
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 2.6e-13 82.0 199 33.2
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 4.4e-13 81.3 98 51.0
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 5.7e-13 80.9 93 39.8
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 9.8e-13 80.1 98 50.0
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 1.8e-11 75.9 93 38.7
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 5.4e-11 74.3 109 42.2
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 8.6e-09 67.0 62 48.4
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 2.5e-08 65.5 131 38.2
SEGI_26698 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 5.6e-08 64.3 88 34.1
SEGI_12195 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 2.1e-07 62.4 111 29.7
SEGI_10601 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 2.3e-06 58.9 75 38.7
SEGI_24122 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 2.3e-06 58.9 72 38.9


User provided reference genes

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