Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 3731.8 1895 100.0
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 3496.1 1906 93.4
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 3433.7 1908 91.7
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 3424.8 1906 91.3
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 3421.3 1906 91.5
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 3409.8 1902 91.7
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3324.3 1929 88.8
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3321.2 1901 89.7
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3319.3 1898 89.9
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3309.2 1898 89.8
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3298.4 1931 88.5
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3287.3 1946 87.7
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3270.3 1900 89.0
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3241.4 1958 86.3
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 3208.7 1923 85.8
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 3038.4 1898 84.5
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2901.7 1915 77.9
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2743.4 1909 74.1
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2392.1 1989 64.2
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2373.6 2040 62.2
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2368.2 2012 63.0
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2361.3 1982 63.3
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2349.3 1991 63.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2336.6 2028 62.1
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2335.5 1995 62.5
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2305.0 1988 62.6
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2293.1 1998 60.6
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2291.2 1988 61.9
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2289.6 1991 61.6
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2287.7 1996 62.4
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2278.8 1965 62.8
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2271.1 1968 62.5
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2265.7 2120 59.2
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2265.0 1980 62.2
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2240.3 2005 59.5
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2224.1 1975 61.5
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2220.3 1989 61.0
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2219.5 1981 60.8
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2216.8 1992 61.0
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2216.0 1975 61.4
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2211.8 1982 60.7
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2206.8 1987 60.2
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2204.1 1980 60.7
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2199.5 2054 59.1
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2189.8 1996 59.5
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2189.5 1981 59.5
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2181.4 1981 60.3
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2174.1 1970 60.3
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2168.3 1968 60.0
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2165.2 1997 59.3
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2164.4 1987 59.8
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2159.8 1980 59.9
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2154.8 2002 59.3
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2154.0 1981 59.6
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2134.0 1978 59.7
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2131.3 1989 58.2
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2128.6 1985 59.4
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2125.1 2099 55.8
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2104.7 1973 59.0
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2103.9 2033 57.7
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2098.9 1993 58.8
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2070.4 1972 56.5
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2067.7 1980 57.5
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2059.3 2006 56.5
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2049.6 2000 56.4
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2048.1 1995 57.2
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2045.8 2092 54.8
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2044.6 1941 57.8
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2041.5 1993 56.1
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2041.2 1986 55.4
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2033.5 1978 56.8
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2025.8 2047 54.9
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2015.4 1841 59.0
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2008.4 2002 55.5
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2008.4 2016 56.2
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1991.5 2009 56.4
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1990.7 1947 57.0
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1983.4 1995 54.9
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1979.9 2048 55.0
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1937.2 1968 54.6
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1919.8 1984 52.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1908.3 1985 55.1
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1883.6 1677 60.3
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1828.1 1979 52.9
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1820.4 2140 50.3
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1803.9 1876 53.6
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1776.9 1895 53.6
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1720.3 1999 50.8
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1683.3 1756 52.7
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1630.2 1658 54.3
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1595.9 1430 61.5
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1575.5 1727 51.5
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1516.5 1979 47.1
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1503.4 1691 52.2
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1491.5 1485 55.8
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1482.6 1361 58.9
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1352.4 1217 59.4
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1239.2 2014 40.8
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1230.7 1897 40.9
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1174.5 1187 55.9
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1155.2 1590 42.7
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1145.6 1167 55.1
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1139.4 1390 47.8
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 5.9e-307 1058.5 777 70.1
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 6.4e-293 1011.9 777 68.1
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 8.7e-274 948.3 787 63.0
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.1e-256 890.6 950 52.2
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 5.8e-254 882.5 845 55.6
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.9e-249 867.5 1008 49.1
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 3.7e-248 863.2 2139 32.6
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 9.7e-241 838.6 2138 32.1
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.5e-220 771.5 1180 41.2
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 3.8e-205 720.3 1243 39.5
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 2.4e-191 674.5 1007 42.2
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 9.2e-183 646.0 1991 30.3
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.6e-171 608.6 415 70.1
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 1.6e-171 608.6 1892 29.4
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.2e-153 549.3 1601 30.3
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 5.8e-153 547.0 644 51.2
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 3.9e-149 534.3 588 50.0
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 8.7e-149 533.1 539 53.8
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.8e-131 474.9 320 70.6
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 7.9e-118 430.3 503 49.9
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.2e-97 363.2 752 37.2
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.7e-96 359.4 482 45.6
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.0e-93 350.1 358 51.4
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.4e-93 349.7 322 59.0
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 4.4e-92 344.7 373 50.9
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 4.5e-89 334.7 219 72.6
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.6e-86 326.2 282 59.6
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.8e-78 298.9 242 64.5
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 4.7e-78 298.1 196 74.5
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 6.1e-78 297.7 210 68.1
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 3.4e-76 292.0 384 51.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-69 267.7 1101 27.2
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 7.8e-65 254.2 165 71.5
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 4.0e-61 241.9 162 70.4
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 9.2e-58 230.7 153 69.9
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 5.1e-56 224.9 302 47.0
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 3.1e-53 215.7 255 50.6
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 6.8e-53 214.5 292 44.9
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.4e-52 212.2 156 65.4
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.1e-50 207.2 424 38.0
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 9.3e-50 204.1 323 42.4
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 9.9e-44 184.1 195 54.9
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.8e-43 182.2 125 64.8
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.2e-41 177.2 218 50.0
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.6e-39 168.3 318 36.2
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 4.8e-38 165.2 118 76.3
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.1e-37 164.1 575 27.5
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 8.4e-35 154.5 388 35.3
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 3.7e-30 139.0 120 63.3
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 2.6e-28 132.9 90 70.0
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 1.0e-27 131.0 440 33.4
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 5.5e-26 125.2 87 70.1
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 9.0e-21 107.8 109 56.0
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 2.6e-20 106.3 111 53.2
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 2.6e-20 106.3 111 53.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-19 104.0 153 43.8
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 3.2e-18 99.4 182 39.0
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.6e-17 97.1 118 45.8
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.6e-17 97.1 68 64.7
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 6.1e-17 95.1 88 56.8
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 6.1e-17 95.1 88 56.8
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 5.7e-15 88.6 67 67.2
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.4e-08 67.4 126 38.9
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 1.8e-08 67.0 70 48.6
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 3.9e-08 65.9 160 35.0
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 5.1e-08 65.5 106 38.7
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 8.8e-08 64.7 98 39.8
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 7.4e-07 61.6 77 42.9
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 9.7e-07 61.2 30 93.3
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 2.2e-06 60.1 94 39.4
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 2.2e-06 60.1 127 37.0


User provided reference genes

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