Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011073m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.8e-34 148.7 74 100.0
BcaC07g40351 Brassica carinata HOM05D001738 ORTHO05D001644 6.0e-14 80.5 59 66.1
Thhalv10006469m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 3.9e-13 77.8 59 67.8
CARHR168120 Cardamine hirsuta HOM05D001738 ORTHO05D001644 8.7e-13 76.6 60 63.3
Thhalv10006448m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 2.1e-11 72.0 71 53.5
Thhalv10009680m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.4e-10 69.3 58 60.3
A07p23760 Brassica napus HOM05D001738 ORTHO05D001644 4.0e-10 67.8 58 60.3
BraA07t30029Z Brassica rapa HOM05D001738 ORTHO05D001644 4.0e-10 67.8 58 60.3
Aa31LG8G6370 Aethionema arabicum HOM05D001738 ORTHO05D001644 6.9e-10 67.0 62 53.2
Thhalv10017844m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.5e-09 65.9 63 57.1
Aa31LG8G6310 Aethionema arabicum HOM05D001738 ORTHO05D001644 2.0e-09 65.5 64 53.1
C06p26140 Brassica napus HOM05D001738 ORTHO05D001644 2.6e-09 65.1 48 70.8
BcaC02g07509 Brassica carinata HOM05D001738 ORTHO05D001644 3.4e-09 64.7 62 53.2
BolC4t28107H Brassica oleracea HOM05D001738 ORTHO05D001644 3.4e-09 64.7 62 53.2
C04p66030 Brassica napus HOM05D001738 ORTHO05D001644 4.5e-09 64.3 62 53.2
Aa31sc18G20 Aethionema arabicum HOM05D001738 ORTHO05D001644 5.8e-09 63.9 72 47.2
AL1G37130 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 5.8e-09 63.9 57 57.9
A04p28700 Brassica napus HOM05D001738 ORTHO05D001644 7.6e-09 63.5 54 59.3
A04p28750 Brassica napus HOM05D001738 ORTHO05D001644 7.6e-09 63.5 54 59.3
BraA04t18347Z Brassica rapa HOM05D001738 ORTHO05D001644 7.6e-09 63.5 54 59.3
BraA04t18351Z Brassica rapa HOM05D001738 ORTHO05D001644 7.6e-09 63.5 54 59.3
BcaB08g37391 Brassica carinata HOM05D001738 ORTHO05D001644 1.3e-08 62.8 66 50.0
Sp1g27610 Schrenkiella parvula HOM05D001738 ORTHO05D001644 2.9e-08 61.6 58 53.4
Carub.0001s1342 Capsella rubella HOM05D001738 ORTHO05D001644 4.9e-08 60.8 72 48.6
TAR624G0325 Trochodendron aralioides HOM05D000007 ORTHO05D000017 4.9e-08 60.8 58 51.7
AL5G25310 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 6.5e-08 60.5 65 50.8
AL7G46450 Arabidopsis lyrata HOM05D000626 ORTHO05D001644 8.4e-08 60.1 57 61.4
Thhalv10028258m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.4e-07 59.3 54 57.4
AL1G25470 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.9e-07 58.9 68 51.5
CARHR024930 Cardamine hirsuta HOM05D001738 ORTHO05D001644 1.9e-07 58.9 68 48.5
BcaC01g01546 Brassica carinata HOM05D001738 ORTHO05D001644 2.5e-07 58.5 63 54.0
BolC3t21603H Brassica oleracea HOM05D001738 ORTHO05D001644 2.5e-07 58.5 62 53.2
BolC8t52365H Brassica oleracea HOM05D001738 ORTHO05D001644 2.5e-07 58.5 67 53.7
CARHR172670 Cardamine hirsuta HOM05D001738 ORTHO05D011550 2.5e-07 58.5 52 55.8
AL5G16800 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 3.2e-07 58.2 72 50.0
Thhalv10003053m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 3.2e-07 58.2 58 50.0
AT5G16285 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 4.2e-07 57.8 63 49.2
A08p31980 Brassica napus HOM05D001738 ORTHO05D001644 4.2e-07 57.8 56 55.4
Carub.0001s2993 Capsella rubella HOM05D001738 ORTHO05D001644 4.2e-07 57.8 54 51.9
Carub.0345s0001 Capsella rubella HOM05D001738 ORTHO05D001644 4.2e-07 57.8 68 51.5
Sp1g28950 Schrenkiella parvula HOM05D001738 ORTHO05D000001 4.2e-07 57.8 62 48.4
AL1G22300 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 5.5e-07 57.4 58 58.6
C09p55670 Brassica napus HOM05D001738 ORTHO05D001644 5.5e-07 57.4 56 55.4
AL1G22320 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 7.1e-07 57.0 71 50.7
Thhalv10028312m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 7.1e-07 57.0 55 58.2
BcaNung06201 Brassica carinata HOM05D001738 ORTHO05D001644 9.3e-07 56.6 72 48.6
C08p16640 Brassica napus HOM05D001738 ORTHO05D001644 9.3e-07 56.6 68 45.6
C08p48460 Brassica napus HOM05D001738 ORTHO05D001644 9.3e-07 56.6 72 48.6
FvH4_3g18910 Fragaria vesca HOM05D000007 ORTHO05D000039 9.3e-07 56.6 74 43.2
Aa31LG4G13090 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.2e-06 56.2 59 50.8
AL4G30220 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.2e-06 56.2 58 53.4
AL6G27180 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.2e-06 56.2 63 49.2
BcaB03g13098 Brassica carinata HOM05D001738 ORTHO05D001644 1.2e-06 56.2 60 48.3
A09p64540 Brassica napus HOM05D001738 ORTHO05D001644 1.2e-06 56.2 72 48.6
BraA09t41803Z Brassica rapa HOM05D001738 ORTHO05D001644 1.2e-06 56.2 72 48.6
BraA09t41808Z Brassica rapa HOM05D001738 ORTHO05D001644 1.2e-06 56.2 72 48.6
Thhalv10010027m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.2e-06 56.2 57 57.9
Sabra11G0105700 Salix brachista HOM05D000007 ORTHO05D000039 1.2e-06 56.2 55 52.7
SGA_v2.0_scaffold89G27503 Striga asiatica HOM05D000007 ORTHO05D000017 1.2e-06 56.2 45 64.4
AL6G26510 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.6e-06 55.8 68 36.8
AT1G11270 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 1.6e-06 55.8 65 50.8
AT1G14315 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 1.6e-06 55.8 45 62.2
AT2G34280 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 1.6e-06 55.8 58 55.2
CARHR125660 Cardamine hirsuta HOM05D001738 ORTHO05D001644 1.6e-06 55.8 70 45.7
AUR62016300 Chenopodium quinoa HOM05D000007 ORTHO05D009490 1.6e-06 55.8 61 49.2
Thhalv10009873m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.6e-06 55.8 58 50.0
Thhalv10025237m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.6e-06 55.8 76 39.5
Aa31LG8G6350 Aethionema arabicum HOM05D001738 ORTHO05D001644 2.1e-06 55.5 57 49.1
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 2.1e-06 55.5 67 49.3
A09p64530 Brassica napus HOM05D001738 ORTHO05D001644 2.1e-06 55.5 72 45.8
BraA09t41802Z Brassica rapa HOM05D001738 ORTHO05D001644 2.1e-06 55.5 72 45.8
Migut.M00250 Erythranthe guttata HOM05D000007 ORTHO05D005385 2.1e-06 55.5 50 54.0
FvH4_3g18960 Fragaria vesca HOM05D000007 ORTHO05D000039 2.1e-06 55.5 52 53.8
Sp1g29020 Schrenkiella parvula HOM05D001738 ORTHO05D011550 2.1e-06 55.5 69 47.8
BcaB08g36508 Brassica carinata HOM05D001738 ORTHO05D001644 2.7e-06 55.1 56 53.6
A09p64880 Brassica napus HOM05D001738 ORTHO05D001644 2.7e-06 55.1 72 47.2
Migut.J01328 Erythranthe guttata HOM05D000007 ORTHO05D005385 2.7e-06 55.1 51 51.0
Migut.L00666 Erythranthe guttata HOM05D000007 ORTHO05D005385 2.7e-06 55.1 56 58.9
FAN11G1989 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.7e-06 55.1 68 42.6
AT1G15015 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 3.5e-06 54.7 57 52.6
BcaB06g26495 Brassica carinata HOM05D000171 ORTHO05D000101 3.5e-06 54.7 55 45.5
BcaC03g13251 Brassica carinata HOM05D001738 ORTHO05D001644 3.5e-06 54.7 54 50.0
C02p03830 Brassica napus HOM05D001738 ORTHO05D001644 3.5e-06 54.7 54 50.0
BraA02t05687Z Brassica rapa HOM05D000171 ORTHO05D000101 3.5e-06 54.7 54 51.9
Dinv38197 Davidia involucrata HOM05D000056 ORTHO05D000019 3.5e-06 54.7 52 51.9
Migut.L00667 Erythranthe guttata HOM05D000007 ORTHO05D005385 3.5e-06 54.7 66 43.9
FAN21G2633 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.5e-06 54.7 49 55.1
FvH4_3g18890 Fragaria vesca HOM05D000007 ORTHO05D000039 4.6e-06 54.3 48 56.2
FAN11G2583 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.6e-06 54.3 48 56.2
Peaxi162Scf00211g00151 Petunia axillaris HOM05D000007 ORTHO05D020324 4.6e-06 54.3 54 57.4
QL08p042875 Quercus lobata HOM05D000007 ORTHO05D000039 4.6e-06 54.3 64 45.3
Sabra11G0105200 Salix brachista HOM05D000007 ORTHO05D000039 4.6e-06 54.3 47 57.4
SalBow8G1563 Salvia bowleyana HOM05D000007 ORTHO05D005385 4.6e-06 54.3 64 43.8
Aa31LG8G6400 Aethionema arabicum HOM05D001738 ORTHO05D001644 6.0e-06 53.9 56 44.6
BcaC04g21963 Brassica carinata HOM05D001738 ORTHO05D001644 6.0e-06 53.9 53 50.9
BolC2t06345H Brassica oleracea HOM05D001738 ORTHO05D001644 6.0e-06 53.9 53 50.9
Carub.0001s1317 Capsella rubella HOM05D001738 ORTHO05D001644 6.0e-06 53.9 52 53.8
CARHR008650 Cardamine hirsuta HOM05D001738 ORTHO05D001644 6.0e-06 53.9 58 50.0
AUR62039091 Chenopodium quinoa HOM05D000007 ORTHO05D000017 6.0e-06 53.9 72 41.7
Migut.G00786 Erythranthe guttata HOM05D000007 ORTHO05D005385 6.0e-06 53.9 56 57.1
Migut.G01060 Erythranthe guttata HOM05D000007 ORTHO05D005385 6.0e-06 53.9 56 57.1
FAN21G2501 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.0e-06 53.9 48 56.2
Lj2C804T8 Lonicera japonica HOM05D000007 ORTHO05D000039 6.0e-06 53.9 54 51.9
AL2G23450 Arabidopsis lyrata HOM05D026666 ORTHO05D026802 7.9e-06 53.5 60 48.3
AL5G45090 Arabidopsis lyrata HOM05D001738 ORTHO05D011550 7.9e-06 53.5 60 48.3
BraA10t44220Z Brassica rapa HOM05D001738 ORTHO05D001644 7.9e-06 53.5 57 54.4
Cc05_g06390 Coffea canephora HOM05D000007 ORTHO05D000039 7.9e-06 53.5 76 40.8


User provided reference genes

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