Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 2.9e-81 305.1 141 100.0
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-74 282.3 159 84.9
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.3e-73 279.6 159 83.6
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 2.2e-73 278.9 159 84.3
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 6.4e-73 277.3 159 83.6
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 6.0e-71 270.8 159 81.8
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 1.7e-70 269.2 154 83.8
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.0e-70 268.5 146 87.0
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.3e-69 264.6 141 87.2
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 6.2e-68 260.8 159 78.0
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.2e-68 260.8 159 78.0
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.2e-68 260.8 159 78.0
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 6.2e-68 260.8 159 77.4
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 8.1e-68 260.4 159 76.7
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 8.1e-68 260.4 159 76.7
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 77.4
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.1e-67 260.0 159 78.0
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 1.4e-67 259.6 159 77.4
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 1.4e-67 259.6 159 76.1
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 1.8e-67 259.2 159 77.4
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 3.1e-67 258.5 159 76.1
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 4.0e-67 258.1 159 76.7
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 4.0e-67 258.1 159 75.5
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 5.2e-67 257.7 159 77.4
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 5.2e-67 257.7 159 77.4
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 6.9e-67 257.3 159 76.7
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 8.9e-67 256.9 159 76.7
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-66 256.5 159 76.7
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 1.5e-66 256.1 159 76.1
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 1.5e-66 256.1 159 76.1
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 2.0e-66 255.8 159 76.1
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.0e-66 255.8 159 76.7
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.0e-66 255.8 159 74.8
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 2.6e-66 255.4 160 76.2
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 2.6e-66 255.4 158 76.6
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 9.9e-66 253.4 159 75.5
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 1.7e-65 252.7 159 74.8
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 1.7e-65 252.7 159 74.8
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 2.2e-65 252.3 157 75.8
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 2.2e-65 252.3 157 75.8
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 2.2e-65 252.3 157 75.8
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 4.9e-65 251.1 159 74.8
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-64 250.0 159 74.2
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-64 248.1 149 79.2
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 5.4e-64 247.7 159 73.6
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 1.2e-63 246.5 158 73.4
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 3.5e-63 245.0 159 73.0
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 6.0e-63 244.2 159 71.7
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 5.1e-62 241.1 157 74.5
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 8.7e-62 240.4 158 71.5
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 9.6e-61 236.9 149 77.9
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 1.3e-60 236.5 151 74.2
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 1.3e-60 236.5 151 74.2
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 1.3e-60 236.5 151 74.2
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 1.1e-59 233.4 159 71.7
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.6e-58 228.8 159 69.2
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 4.5e-58 228.0 159 68.6
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 9.9e-58 226.9 144 73.6
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.3e-57 226.5 163 71.2
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.7e-57 226.1 142 76.1
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 4.9e-57 224.6 141 74.5
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 6.4e-57 224.2 139 77.0
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-56 223.4 159 71.7
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.4e-56 223.0 143 75.5
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.2e-55 219.9 139 74.8
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.5e-55 218.4 139 74.8
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 1.9e-53 212.6 140 73.6
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.5e-53 212.2 134 76.1
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.0e-51 204.9 119 81.5
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.0e-50 202.6 134 73.1
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 1.6e-47 193.0 153 64.1
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 7.4e-45 184.1 92 92.4
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.4e-43 179.1 139 63.3
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 3.1e-43 178.7 107 80.4
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-43 178.7 107 80.4
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 5.3e-43 177.9 89 92.1
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 1.7e-41 172.9 135 65.2
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.2e-41 172.6 132 63.6
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 3.8e-41 171.8 93 83.9
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 4.9e-41 171.4 93 82.8
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 1.9e-40 169.5 117 71.8
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.2e-39 166.8 159 53.5
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.2e-39 166.8 159 53.5
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.2e-39 166.8 159 53.5
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.8e-38 162.9 94 79.8
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 2.3e-38 162.5 159 55.3
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 3.0e-38 162.2 91 80.2
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 8.7e-38 160.6 91 80.2
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 3.3e-37 158.7 136 62.5
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.3e-36 156.8 91 78.0
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 2.8e-36 155.6 127 58.3
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 4.8e-36 154.8 84 82.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 8.2e-36 154.1 83 84.3
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.1e-35 153.7 83 84.3
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 1.8e-35 152.9 105 72.4
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 3.1e-35 152.1 83 83.1
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 4.1e-35 151.8 83 81.9
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 5.3e-35 151.4 109 69.7
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 6.9e-35 151.0 100 73.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 6.9e-35 151.0 100 73.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 6.9e-35 151.0 100 73.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 1.2e-34 150.2 83 81.9
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 7.6e-34 147.5 77 87.0
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 7.6e-34 147.5 93 73.1
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.3e-33 146.7 101 71.3
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 3.2e-32 142.1 100 70.0
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.2e-31 140.2 87 73.6
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.9e-30 135.2 84 73.8
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 6.7e-30 134.4 91 68.1
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 8.7e-30 134.0 72 84.7
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 8.7e-30 134.0 113 59.3
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.5e-29 133.3 118 61.9
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.9e-29 132.9 111 61.3
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.3e-29 132.1 83 72.3
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.3e-29 131.7 148 54.7
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-27 127.1 68 83.8
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.4e-27 125.9 118 56.8
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 1.5e-26 123.2 65 83.1
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 3.8e-25 118.6 90 65.6
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 6.5e-25 117.9 100 62.0
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.2e-24 114.4 59 84.7
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.3e-22 109.4 57 84.2
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 3.0e-22 109.0 55 85.5
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 5.1e-22 108.2 59 79.7
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 2.6e-21 105.9 82 67.1
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 3.3e-21 105.5 53 88.7
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 3.7e-20 102.1 50 90.0
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-19 100.5 78 64.1
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 4.1e-19 98.6 43 100.0
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 5.9e-18 94.7 78 64.1
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 7.7e-18 94.4 50 82.0
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 6.5e-17 91.3 91 51.6
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.3e-14 82.8 41 87.8
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 6.7e-14 81.3 68 54.4
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 8.2e-12 74.3 39 84.6
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 1.8e-11 73.2 48 72.9
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 4.1e-11 72.0 40 82.5
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.8e-09 65.5 69 50.7
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 1.9e-08 63.2 32 87.5
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.2e-07 60.5 53 54.7
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 5.2e-06 55.1 24 95.8
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 8.8e-06 54.3 27 88.9


User provided reference genes

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