Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 2.2e-39 165.2 89 100.0
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 2.1e-37 158.7 89 95.5
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 2.1e-37 158.7 89 95.5
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 2.1e-37 158.7 89 95.5
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 2.1e-37 158.7 89 95.5
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 2.1e-37 158.7 89 95.5
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 2.1e-37 158.7 89 95.5
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 4.7e-37 157.5 89 94.4
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 4.4e-35 151.0 91 91.2
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 2.0e-32 142.1 89 84.3
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 2.0e-32 142.1 89 83.1
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 2.0e-32 142.1 89 83.1
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 2.0e-32 142.1 89 83.1
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 7.7e-32 140.2 89 83.1
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 7.7e-32 140.2 89 83.1
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 1.0e-31 139.8 89 86.5
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.7e-31 139.0 89 85.4
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 3.8e-31 137.9 88 86.4
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 1.5e-30 136.0 89 84.3
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.6e-24 115.9 73 82.2
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 1.3e-23 112.8 89 70.8
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 6.8e-20 100.5 78 74.4
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 8.8e-20 100.1 92 64.1
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 1.8e-17 92.4 73 72.6
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 3.1e-17 91.7 90 60.0
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 5.4e-17 90.9 77 67.5
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 5.4e-17 90.9 78 64.1
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 7.0e-17 90.5 73 64.4
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 9.1e-17 90.1 70 68.6
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 2.0e-16 89.0 80 65.0
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.5e-16 88.2 71 69.0
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 3.5e-16 88.2 67 65.7
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 4.5e-16 87.8 87 58.6
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 5.9e-16 87.4 72 65.3
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 1.0e-15 86.7 87 57.5
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.0e-15 86.7 68 67.6
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 1.3e-15 86.3 89 56.2
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.3e-15 86.3 70 64.3
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 1.3e-15 86.3 72 65.3
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.7e-15 85.9 76 65.8
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 1.7e-15 85.9 69 66.7
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 2.3e-15 85.5 70 65.7
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 2.9e-15 85.1 80 57.5
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.9e-15 85.1 72 62.5
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.8e-15 84.7 70 67.1
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.0e-15 84.3 79 62.0
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 5.0e-15 84.3 72 63.9
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 6.6e-15 84.0 82 61.0
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 6.6e-15 84.0 83 59.0
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 6.6e-15 84.0 83 60.2
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 6.6e-15 84.0 72 65.3
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.6e-15 84.0 73 64.4
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 8.6e-15 83.6 73 64.4
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 8.6e-15 83.6 79 64.6
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 1.1e-14 83.2 83 60.2
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 1.1e-14 83.2 87 59.8
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 1.5e-14 82.8 85 58.8
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 1.5e-14 82.8 83 57.8
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.9e-14 82.4 79 63.3
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 2.5e-14 82.0 83 59.0
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 3.3e-14 81.6 78 62.8
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 4.2e-14 81.3 86 57.0
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 4.2e-14 81.3 71 63.4
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 7.2e-14 80.5 80 58.8
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 7.2e-14 80.5 71 57.7
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 7.2e-14 80.5 77 59.7
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-13 79.7 90 53.3
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.2e-13 79.7 75 60.0
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 1.6e-13 79.3 85 56.5
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 2.8e-13 78.6 97 53.6
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.1e-13 77.4 107 50.5
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.1e-13 77.4 107 50.5
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 8.0e-13 77.0 92 53.3
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.0e-12 76.6 78 59.0
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.4e-12 76.3 98 52.0
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.8e-12 75.9 93 53.8
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 1.8e-12 75.9 90 55.6
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 2.3e-12 75.5 92 52.2
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 2.3e-12 75.5 97 51.5
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 3.0e-12 75.1 91 52.7
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.0e-12 75.1 91 52.7
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 4.0e-12 74.7 78 60.3
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 8.9e-12 73.6 96 50.0
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.6e-11 72.0 69 50.7
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.6e-11 72.0 67 55.2
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.6e-11 72.0 67 55.2
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.4e-11 71.6 64 62.5
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 5.7e-11 70.9 89 49.4
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 5.7e-11 70.9 89 49.4
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 5.7e-11 70.9 89 49.4
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 7.5e-11 70.5 84 52.4
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 7.5e-11 70.5 103 42.7
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 1.3e-10 69.7 90 52.2
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 1.3e-10 69.7 83 51.8
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.7e-10 69.3 89 48.3
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.7e-10 69.3 89 48.3
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 6.3e-10 67.4 81 51.9
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 1.1e-09 66.6 77 51.9
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 1.4e-09 66.2 69 55.1
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 2.4e-09 65.5 84 48.8
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 2.4e-09 65.5 79 51.9
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 2.4e-09 65.5 72 56.9
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 3.1e-09 65.1 54 68.5
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 3.1e-09 65.1 73 56.2
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 5.4e-09 64.3 100 43.0
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 1.2e-08 63.2 77 48.1
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 2.0e-08 62.4 55 61.8
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 2.7e-08 62.0 83 50.6
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 3.5e-08 61.6 96 43.8
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 5.9e-08 60.8 66 57.6
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 5.9e-08 60.8 79 53.2
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 7.8e-08 60.5 45 68.9
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 1.0e-07 60.1 83 48.2
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.0e-07 60.1 55 61.8
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 1.3e-07 59.7 65 52.3
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 1.7e-07 59.3 90 46.7
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 1.7e-07 59.3 63 58.7
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 2.9e-07 58.5 50 64.0
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 2.9e-07 58.5 92 46.7
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 2.9e-07 58.5 90 45.6
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 2.9e-07 58.5 43 67.4
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 2.9e-07 58.5 69 53.6
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 3.9e-07 58.2 69 53.6
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 5.0e-07 57.8 88 43.2
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 5.0e-07 57.8 98 42.9
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 5.0e-07 57.8 69 53.6
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 8.6e-07 57.0 69 55.1
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 8.6e-07 57.0 60 60.0
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 1.1e-06 56.6 72 48.6
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 1.5e-06 56.2 85 45.9
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 1.9e-06 55.8 79 46.8
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 3.3e-06 55.1 72 50.0
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 4.3e-06 54.7 57 54.4
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 4.3e-06 54.7 63 54.0
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 7.3e-06 53.9 71 57.7
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 7.3e-06 53.9 63 52.4


User provided reference genes

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