Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.8e-61 236.9 115 100.0
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.8e-53 210.3 115 88.7
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.3e-52 209.5 115 87.8
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.3e-52 209.5 115 87.8
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 6.6e-52 207.2 115 87.0
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 6.6e-52 207.2 115 87.0
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-51 206.1 116 88.8
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-51 206.1 116 88.8
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-51 206.1 116 88.8
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-49 198.7 116 87.9
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 9.0e-49 196.8 116 82.8
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 5.8e-48 194.1 110 88.2
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 5.8e-48 194.1 110 88.2
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 4.9e-47 191.0 120 82.5
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 4.6e-45 184.5 118 82.2
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-43 179.9 142 67.6
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 2.1e-42 175.6 115 79.1
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 2.8e-42 175.3 115 79.1
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 5.3e-41 171.0 101 84.2
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 5.3e-41 171.0 101 84.2
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-40 169.1 101 83.2
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 2.2e-39 165.6 176 54.5
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 8.4e-39 163.7 133 65.4
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.2e-38 161.8 127 68.5
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 4.3e-35 151.4 151 58.9
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 8.1e-34 147.1 122 59.8
BcaC06g33072 Brassica carinata HOM05D003805 ORTHO05D004300 9.3e-30 133.7 115 62.6
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.3e-28 129.0 121 59.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.9e-28 128.3 115 60.9
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 4.1e-25 118.2 115 58.3
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.0e-24 115.9 120 54.2
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 5.9e-24 114.4 120 55.0
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.7e-23 112.8 116 54.3
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 7.2e-22 107.5 125 50.4
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.2e-21 106.7 126 47.6
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 6.1e-21 104.4 115 53.9
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 6.1e-21 104.4 133 48.9
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.3e-20 103.2 129 45.0
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.8e-20 102.8 116 52.6
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.8e-20 102.8 138 48.6
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.7e-20 100.9 115 50.4
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.7e-20 100.5 137 46.0
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.5e-19 99.8 139 45.3
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 1.9e-19 99.4 123 51.2
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 1.9e-19 99.4 123 51.2
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 1.9e-19 99.4 123 51.2
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.9e-19 99.4 143 45.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.9e-19 99.4 143 45.5
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.9e-19 99.4 129 48.8
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 3.3e-19 98.6 136 44.9
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 3.3e-19 98.6 128 43.8
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.3e-19 98.6 129 46.5
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 4.3e-19 98.2 123 44.7
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.3e-18 96.7 143 44.8
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.3e-18 96.7 136 44.9
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.6e-18 96.3 126 48.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.6e-18 96.3 140 44.3
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.2e-18 95.9 134 44.8
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 2.8e-18 95.5 140 44.3
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 2.8e-18 95.5 134 44.0
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 3.7e-18 95.1 134 44.8
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 8.2e-18 94.0 129 44.2
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 8.2e-18 94.0 123 45.5
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.1e-17 93.6 130 46.2
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.1e-17 93.6 147 42.9
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.4e-17 93.2 128 44.5
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.8e-17 92.8 126 47.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.1e-17 92.0 135 43.7
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 3.1e-17 92.0 134 43.3
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 4.1e-17 91.7 128 42.2
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 5.3e-17 91.3 130 43.8
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 6.9e-17 90.9 136 42.6
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 6.9e-17 90.9 129 44.2
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 9.0e-17 90.5 138 41.3
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 9.0e-17 90.5 118 43.2
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.2e-16 90.1 141 39.7
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 1.2e-16 90.1 134 44.0
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.0e-16 89.4 129 44.2
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.0e-16 89.4 129 43.4
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 2.6e-16 89.0 130 42.3
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.6e-16 89.0 132 45.5
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 4.5e-16 88.2 143 39.2
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.5e-16 88.2 130 36.2
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 5.9e-16 87.8 129 43.4
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 7.7e-16 87.4 132 43.9
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 7.7e-16 87.4 131 43.5
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 7.7e-16 87.4 133 41.4
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.0e-15 87.0 130 41.5
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.0e-15 87.0 135 42.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.3e-15 86.7 129 41.9
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.3e-15 86.7 133 42.9
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.7e-15 86.3 130 40.8
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 2.2e-15 85.9 130 39.2
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 2.2e-15 85.9 130 41.5
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.2e-15 85.9 133 42.1
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.2e-15 85.9 116 42.2
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.9e-15 85.5 133 40.6
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.9e-15 85.5 116 41.4
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 3.8e-15 85.1 124 43.5
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 3.8e-15 85.1 126 41.3
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.0e-15 84.7 135 40.7
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.9e-14 82.8 131 41.2
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.9e-14 82.8 132 40.2
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.9e-14 82.8 117 41.9
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 3.2e-14 82.0 128 35.9
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 5.5e-14 81.3 131 40.5
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-14 81.3 131 39.7
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-14 80.9 131 39.7
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 7.2e-14 80.9 131 40.5
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 40.5
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 40.5
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-13 80.1 131 39.7
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.2e-13 80.1 120 43.3
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-13 79.7 131 39.7
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-13 79.7 131 39.7
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 1.6e-13 79.7 138 41.3
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-13 79.3 131 41.2
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-13 79.3 131 39.7
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.1e-13 79.3 129 39.5
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 2.1e-13 79.3 128 42.2
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.7e-13 79.0 121 38.0
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 2.7e-13 79.0 131 39.7
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-13 78.6 131 39.7
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-13 78.6 131 39.7
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-13 78.6 131 39.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.6e-13 78.6 131 39.7
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.6e-13 78.6 138 38.4
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 4.6e-13 78.2 147 38.1
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.1e-13 77.8 131 39.7
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 41.2
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 38.9
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 38.9
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 38.9
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 38.9
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 38.9
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.0e-12 77.0 145 35.2
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 2.3e-12 75.9 130 38.5
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 3.9e-12 75.1 104 38.5
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.7e-12 74.3 114 44.7
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 8.8e-12 73.9 113 44.2
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.1e-11 73.6 131 39.7
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-11 73.2 131 36.6
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-11 73.2 131 37.4
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-11 73.2 131 38.2
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-11 73.2 131 38.2
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 1.5e-11 73.2 131 37.4
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 1.5e-11 73.2 125 38.4
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 2.0e-11 72.8 110 40.0
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 2.5e-11 72.4 131 38.9
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 4.3e-11 71.6 110 40.9
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 4.3e-11 71.6 131 38.9
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 7.4e-11 70.9 123 35.8
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 1.7e-10 69.7 124 38.7
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.8e-10 68.9 118 39.8
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.7e-10 68.6 120 36.7
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.8e-10 68.2 120 37.5
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 8.2e-10 67.4 117 37.6
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.1e-09 67.0 114 39.5
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.8e-09 66.2 118 39.0
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.8e-09 66.2 119 37.8
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 2.4e-09 65.9 117 39.3
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 6.9e-09 64.3 117 39.3
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 6.9e-09 64.3 114 36.0
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 1.2e-08 63.5 108 41.7
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 1.5e-08 63.2 108 37.0
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.0e-08 62.8 60 53.3
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.6e-08 62.4 99 40.4
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 3.4e-08 62.0 119 38.7
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.0e-07 60.5 66 50.0
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.0e-07 60.5 121 38.0
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 1.7e-07 59.7 115 37.4
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 2.2e-07 59.3 120 34.2
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 2.2e-07 59.3 110 38.2
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.9e-07 58.9 124 35.5
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 3.8e-07 58.5 127 30.7
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 5.0e-07 58.2 111 35.1
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 6.5e-07 57.8 54 53.7
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 8.5e-07 57.4 106 34.0
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.4e-06 56.6 124 35.5
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.5e-06 54.7 117 34.2
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 9.4e-06 53.9 118 33.9


User provided reference genes

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