Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 2.7e-64 248.8 157 100.0
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.3e-58 229.9 157 77.1
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 1.7e-58 229.6 157 93.6
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 2.5e-57 225.7 157 93.6
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 7.2e-57 224.2 157 90.4
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 6.1e-56 221.1 157 90.4
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 2.3e-55 219.2 157 90.4
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 3.9e-55 218.4 157 89.2
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 5.1e-55 218.0 157 88.5
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.9e-54 216.1 121 89.3
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 3.3e-54 215.3 157 87.3
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 2.8e-37 159.1 133 64.7
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 3.8e-34 148.7 119 67.2
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 3.2e-33 145.6 119 68.1
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 5.5e-33 144.8 136 61.0
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 1.6e-32 143.3 136 59.6
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 1.6e-32 143.3 119 65.5
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 2.7e-32 142.5 145 58.6
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 3.6e-32 142.1 153 56.9
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 3.6e-32 142.1 119 64.7
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.6e-32 142.1 119 65.5
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 4.7e-32 141.7 119 64.7
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 4.7e-32 141.7 119 64.7
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 4.7e-32 141.7 119 65.5
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 8.0e-32 141.0 131 58.8
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 8.0e-32 141.0 100 73.0
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 8.0e-32 141.0 83 85.5
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 8.0e-32 141.0 153 55.6
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 1.0e-31 140.6 118 63.6
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.0e-31 140.6 83 86.7
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.4e-31 140.2 119 64.7
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 1.4e-31 140.2 96 79.2
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 1.4e-31 140.2 119 65.5
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 1.4e-31 140.2 83 85.5
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.8e-31 139.8 136 59.6
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 1.8e-31 139.8 119 63.0
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 2.3e-31 139.4 139 57.6
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 2.3e-31 139.4 130 60.0
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 2.3e-31 139.4 119 64.7
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 3.0e-31 139.0 82 85.4
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 3.0e-31 139.0 130 57.7
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 3.0e-31 139.0 130 57.7
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 3.0e-31 139.0 83 84.3
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.0e-31 139.0 119 63.9
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 3.0e-31 139.0 136 59.6
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 4.0e-31 138.7 136 59.6
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 4.0e-31 138.7 136 59.6
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 4.0e-31 138.7 119 63.9
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 5.2e-31 138.3 119 63.9
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 5.2e-31 138.3 119 63.0
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 5.2e-31 138.3 138 55.8
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 6.7e-31 137.9 118 65.3
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 6.7e-31 137.9 119 63.9
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 6.7e-31 137.9 119 62.2
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 6.7e-31 137.9 119 64.7
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 8.8e-31 137.5 83 84.3
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 8.8e-31 137.5 131 58.0
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 8.8e-31 137.5 134 58.2
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.2e-30 137.1 119 63.9
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 1.2e-30 137.1 132 59.1
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 1.2e-30 137.1 83 83.1
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 1.5e-30 136.7 157 52.9
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.5e-30 136.7 119 62.2
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 1.5e-30 136.7 137 57.7
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 1.5e-30 136.7 117 63.2
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 2.0e-30 136.3 98 72.4
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 2.0e-30 136.3 119 66.4
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 2.0e-30 136.3 86 79.1
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 2.0e-30 136.3 98 73.5
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 2.6e-30 136.0 101 70.3
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 2.6e-30 136.0 100 72.0
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 2.6e-30 136.0 119 61.3
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 3.3e-30 135.6 83 81.9
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 3.3e-30 135.6 119 62.2
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.4e-30 135.2 119 61.3
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 4.4e-30 135.2 97 73.2
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 7.5e-30 134.4 97 72.2
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 9.7e-30 134.0 124 59.7
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 9.7e-30 134.0 83 79.5
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 9.7e-30 134.0 111 66.7
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 1.3e-29 133.7 82 82.9
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 1.7e-29 133.3 142 54.9
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 3.7e-29 132.1 97 71.1
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 4.8e-29 131.7 97 72.2
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 4.8e-29 131.7 117 62.4
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 6.3e-29 131.3 119 60.5
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 6.3e-29 131.3 136 55.1
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 6.3e-29 131.3 136 55.1
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 8.2e-29 131.0 143 53.8
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.4e-28 130.2 83 80.7
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.8e-28 129.8 92 73.9
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.8e-28 129.8 136 54.4
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 2.4e-28 129.4 131 58.0
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 2.4e-28 129.4 92 75.0
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 5.3e-28 128.3 119 58.8
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 5.3e-28 128.3 119 58.8
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 5.3e-28 128.3 82 79.3
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 7.0e-28 127.9 92 72.8
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 7.0e-28 127.9 136 53.7
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 9.1e-28 127.5 83 78.3
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 9.1e-28 127.5 113 61.9
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 1.2e-27 127.1 119 57.1
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 2.0e-27 126.3 128 57.8
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 3.5e-27 125.6 146 53.4
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 3.5e-27 125.6 128 57.0
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 4.5e-27 125.2 154 50.6
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 4.5e-27 125.2 128 58.6
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 1.0e-26 124.0 98 69.4
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 1.7e-26 123.2 83 73.5
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.9e-26 122.5 118 62.7
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 1.5e-25 120.2 81 76.5
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 7.2e-25 117.9 109 62.4
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 3.6e-24 115.5 86 67.4
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 4.7e-24 115.2 87 67.8
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 8.0e-24 114.4 92 67.4
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 1.0e-23 114.0 74 77.0
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 2.3e-23 112.8 119 58.8
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 1.5e-22 110.2 82 64.6
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 6.3e-21 104.8 74 70.3
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 8.3e-21 104.4 84 60.7
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 2.7e-19 99.4 85 90.6
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 2.7e-19 99.4 145 53.1
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 2.5e-17 92.8 82 56.1
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 4.7e-16 88.6 150 42.0
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 8.9e-15 84.3 91 50.5
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 3.4e-14 82.4 48 87.5
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 5.7e-14 81.6 112 45.5
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 1.7e-13 80.1 86 53.5
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 2.8e-13 79.3 110 42.7
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 4.9e-13 78.6 92 51.1
Aa31LG10G7880 Aethionema arabicum HOM05D005449 ORTHO05D006916 1.8e-12 76.6 74 89.2
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 5.6e-09 65.1 74 52.7
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.6e-09 65.1 34 88.2
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 7.3e-09 64.7 46 65.2
A07p21230 Brassica napus HOM05D005449 ORTHO05D027985 8.9e-07 57.8 37 75.7
BraA07t29810Z Brassica rapa HOM05D005449 ORTHO05D027985 8.9e-07 57.8 37 75.7
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.5e-06 57.0 33 75.8
C06p20730 Brassica napus HOM05D005449 ORTHO05D027985 3.4e-06 55.8 37 73.0
BolC6t37256H Brassica oleracea HOM05D005449 ORTHO05D027985 3.4e-06 55.8 37 73.0


User provided reference genes

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