Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 1.4e-96 356.3 183 100.0
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 2.3e-83 312.4 183 89.6
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 2.4e-80 302.4 181 86.7
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 7.0e-80 300.8 181 85.6
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 2.7e-79 298.9 183 85.8
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 2.3e-78 295.8 182 86.3
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 3.6e-76 288.5 189 83.1
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 3.4e-74 282.0 178 84.8
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 3.4e-74 282.0 178 84.8
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 9.8e-74 280.4 178 84.8
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 9.8e-74 280.4 178 84.8
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 1.3e-73 280.0 186 81.2
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 1.1e-72 276.9 187 79.7
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 1.1e-72 276.9 187 79.7
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 1.2e-71 273.5 187 80.2
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 1.7e-65 253.1 136 94.1
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.8e-51 206.5 182 63.7
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 1.4e-48 196.8 140 69.3
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.9e-48 196.4 164 64.6
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.4e-48 196.1 164 64.6
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 2.4e-48 196.1 186 58.6
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 5.4e-48 194.9 151 64.9
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 7.1e-48 194.5 190 58.9
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.2e-47 193.7 129 75.2
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 2.1e-47 193.0 154 65.6
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 2.1e-47 193.0 193 58.0
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 2.7e-47 192.6 129 74.4
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 7.8e-47 191.0 129 73.6
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 2.3e-46 189.5 139 66.2
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 2.3e-46 189.5 182 57.1
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 3.9e-46 188.7 138 71.0
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 5.1e-46 188.3 183 55.7
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 6.6e-46 188.0 136 69.9
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 8.7e-46 187.6 138 68.1
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.5e-45 186.8 162 62.3
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 1.9e-45 186.4 138 66.7
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 2.5e-45 186.0 147 66.0
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 2.5e-45 186.0 156 61.5
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 2.5e-45 186.0 117 75.2
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 2.5e-45 186.0 137 70.1
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 3.3e-45 185.7 130 68.5
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 3.3e-45 185.7 136 71.3
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 4.3e-45 185.3 141 65.2
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 4.3e-45 185.3 137 69.3
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 5.6e-45 184.9 188 58.0
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 7.3e-45 184.5 138 68.1
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 9.6e-45 184.1 131 71.0
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 1.2e-44 183.7 125 72.0
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 1.2e-44 183.7 130 70.8
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.6e-44 183.3 141 63.1
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 2.1e-44 183.0 173 59.5
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 2.8e-44 182.6 135 68.9
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 3.6e-44 182.2 184 54.3
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 4.7e-44 181.8 131 67.2
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 8.1e-44 181.0 141 66.7
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 8.1e-44 181.0 191 56.5
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 1.1e-43 180.6 131 69.5
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 1.4e-43 180.3 131 67.2
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 1.4e-43 180.3 141 66.7
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 1.8e-43 179.9 182 57.1
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 3.1e-43 179.1 133 66.9
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.2e-42 177.2 147 63.3
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 1.5e-42 176.8 131 65.6
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 2.0e-42 176.4 139 65.5
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 2.6e-42 176.0 141 61.7
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 2.6e-42 176.0 161 61.5
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.6e-42 176.0 135 67.4
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 5.8e-42 174.9 129 67.4
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 2.2e-41 172.9 155 60.0
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 2.9e-41 172.6 153 56.9
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.8e-41 172.2 182 53.8
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 4.9e-41 171.8 109 71.6
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 6.4e-41 171.4 136 64.0
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 6.4e-41 171.4 134 67.9
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 1.1e-40 170.6 149 60.4
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.4e-40 170.2 182 54.4
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 1.9e-40 169.9 189 55.6
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 1.9e-40 169.9 181 54.7
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.4e-40 169.5 182 54.9
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.4e-40 169.5 182 54.9
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 3.2e-40 169.1 130 65.4
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 3.2e-40 169.1 109 75.2
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.2e-40 168.7 182 53.8
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 4.2e-40 168.7 134 66.4
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 5.4e-40 168.3 179 54.7
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 5.4e-40 168.3 179 54.7
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 7.1e-40 167.9 167 55.1
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 9.3e-40 167.5 167 54.5
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 6.0e-39 164.9 106 75.5
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 1.3e-38 163.7 135 61.5
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 1.7e-38 163.3 191 51.3
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 2.3e-38 162.9 136 62.5
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 3.0e-38 162.5 192 51.6
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 3.9e-38 162.2 111 69.4
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 5.1e-38 161.8 122 63.9
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 5.1e-38 161.8 122 63.9
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 6.6e-38 161.4 129 62.8
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.9e-37 159.8 141 60.3
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 3.3e-37 159.1 129 64.3
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 4.8e-36 155.2 166 54.8
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 1.4e-35 153.7 192 48.4
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 1.4e-35 153.7 183 48.1
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 4.0e-35 152.1 132 62.1
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 2.6e-34 149.4 117 69.2
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 5.8e-34 148.3 129 59.7
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 1.7e-33 146.7 94 75.5
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 1.4e-32 143.7 154 55.2
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 4.2e-32 142.1 109 58.7
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 5.4e-32 141.7 144 55.6
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 5.4e-32 141.7 86 77.9
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.7e-31 139.4 97 70.1
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 4.6e-31 138.7 126 61.1
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 3.0e-30 136.0 126 54.8
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 8.7e-30 134.4 111 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 3.3e-29 132.5 123 50.4
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 7.4e-29 131.3 107 65.4
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 1.2e-26 124.0 116 50.9
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 4.5e-26 122.1 124 56.5
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 6.4e-25 118.2 143 42.7
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 1.2e-15 87.4 122 39.3
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 2.1e-15 86.7 98 44.9
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 6.3e-12 75.1 74 51.4
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 9.4e-08 61.2 63 49.2
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 1.0e-06 57.8 81 39.5


User provided reference genes

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