Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 1.1e-104 383.3 193 100.0
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 6.1e-82 307.8 195 83.1
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 7.4e-80 300.8 198 80.8
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 6.3e-79 297.7 198 79.3
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 6.9e-78 294.3 198 78.8
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 1.5e-77 293.1 198 79.3
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 1.0e-76 290.4 196 79.6
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 2.9e-76 288.9 195 77.4
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 5.0e-76 288.1 196 79.1
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 5.0e-76 288.1 196 79.1
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.1e-75 287.0 198 78.8
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 2.5e-75 285.8 197 78.7
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 1.6e-74 283.1 196 78.1
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 3.6e-74 282.0 196 78.6
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 4.6e-74 281.6 194 76.3
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 3.0e-73 278.9 195 74.9
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 5.7e-72 274.6 195 73.3
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 2.3e-57 226.1 182 64.8
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 2.3e-49 199.5 211 53.6
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 4.2e-43 178.7 197 50.3
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 1.4e-41 173.7 182 53.8
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.8e-41 173.3 194 51.0
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 2.6e-40 169.5 195 49.2
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 2.6e-40 169.5 202 50.0
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 3.4e-40 169.1 138 62.3
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 5.7e-40 168.3 189 49.2
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 1.7e-39 166.8 200 47.5
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 2.8e-39 166.0 112 68.8
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 3.7e-39 165.6 190 50.5
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 4.9e-39 165.2 192 50.5
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 4.9e-39 165.2 188 50.5
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 6.3e-39 164.9 191 50.8
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 6.3e-39 164.9 182 51.6
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.1e-38 164.1 201 50.7
BolC6t37424H Brassica oleracea HOM05D005893 ORTHO05D007295 1.4e-38 163.7 133 69.9
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 4.1e-38 162.2 194 50.0
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 5.4e-38 161.8 131 63.4
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 7.0e-38 161.4 129 64.3
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 7.0e-38 161.4 190 46.3
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 7.0e-38 161.4 187 48.7
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 7.0e-38 161.4 194 46.4
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 7.0e-38 161.4 100 75.0
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 9.1e-38 161.0 114 67.5
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 9.1e-38 161.0 121 63.6
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 1.2e-37 160.6 118 62.7
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.2e-37 160.6 186 49.5
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 1.2e-37 160.6 127 64.6
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 2.0e-37 159.8 194 46.9
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 2.7e-37 159.5 122 63.1
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 2.7e-37 159.5 192 48.4
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 2.7e-37 159.5 105 69.5
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.7e-37 159.5 98 74.5
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 3.5e-37 159.1 184 50.0
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 3.5e-37 159.1 185 48.6
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 3.5e-37 159.1 194 47.9
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 3.5e-37 159.1 197 49.7
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 4.5e-37 158.7 111 66.7
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 4.5e-37 158.7 123 61.0
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 7.7e-37 157.9 183 47.5
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 7.7e-37 157.9 200 49.0
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 7.7e-37 157.9 121 67.8
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 1.0e-36 157.5 180 47.8
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.0e-36 157.5 191 48.2
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 1.3e-36 157.1 199 46.2
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 1.7e-36 156.8 162 50.6
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.7e-36 156.8 110 70.0
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.7e-36 156.8 96 76.0
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 1.7e-36 156.8 124 58.1
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 1.7e-36 156.8 191 48.2
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 1.7e-36 156.8 175 46.9
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.7e-36 156.8 146 56.2
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.3e-36 156.4 108 68.5
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 2.3e-36 156.4 134 59.7
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 2.3e-36 156.4 187 49.7
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 2.3e-36 156.4 139 56.1
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 2.9e-36 156.0 94 73.4
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 3.8e-36 155.6 117 65.8
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 5.0e-36 155.2 121 63.6
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 5.0e-36 155.2 137 59.1
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 5.0e-36 155.2 194 44.8
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 8.6e-36 154.5 192 48.4
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 8.6e-36 154.5 144 52.8
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.1e-35 154.1 181 49.7
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 1.5e-35 153.7 194 47.4
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 1.5e-35 153.7 193 47.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.9e-35 153.3 196 46.9
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 2.5e-35 152.9 92 77.2
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.5e-35 152.9 94 74.5
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 2.5e-35 152.9 188 48.4
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 5.5e-35 151.8 182 48.4
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 5.5e-35 151.8 182 48.4
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 5.5e-35 151.8 182 48.4
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 5.5e-35 151.8 194 47.4
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 9.5e-35 151.0 92 76.1
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 9.5e-35 151.0 112 61.6
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 1.6e-34 150.2 146 55.5
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 8.0e-34 147.9 153 51.6
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.0e-33 147.5 145 53.8
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 1.8e-33 146.7 142 52.8
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 3.0e-33 146.0 90 71.1
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.0e-33 146.0 90 71.1
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.0e-33 146.0 90 71.1
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 4.0e-33 145.6 127 52.8
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 5.2e-33 145.2 90 72.2
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 6.8e-33 144.8 138 53.6
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 6.8e-33 144.8 126 57.1
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 6.8e-33 144.8 82 81.7
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 1.5e-32 143.7 196 42.3
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.4e-32 142.1 90 70.0
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.3e-31 140.6 90 68.9
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 1.1e-30 137.5 174 47.1
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 2.4e-30 136.3 98 63.3
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 7.8e-29 131.3 139 51.1
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 3.9e-28 129.0 77 74.0
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 5.0e-28 128.6 117 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 1.9e-27 126.7 87 60.9
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 6.1e-26 121.7 133 47.4
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 1.4e-25 120.6 95 56.8
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.5e-24 117.1 78 66.7
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.7e-23 113.6 105 50.5
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.0e-20 104.4 96 56.2
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.1e-19 100.9 94 56.4
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 3.3e-19 99.4 96 51.0
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 4.3e-19 99.0 127 43.3
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 5.6e-19 98.6 70 61.4
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 2.2e-15 86.7 89 46.1
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 1.9e-14 83.6 90 47.8
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 7.1e-14 81.6 49 69.4
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.1e-13 80.1 94 50.0
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.5e-11 73.2 87 41.4
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 5.6e-11 72.0 78 41.0
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 4.7e-10 68.9 50 62.0
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 4.7e-10 68.9 121 35.5
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.2e-09 65.5 77 45.5
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 2.6e-08 63.2 53 52.8
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 1.7e-07 60.5 84 33.3
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.9e-07 58.9 50 56.0
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 8.4e-07 58.2 50 44.0
Peaxi162Scf00198g00412 Petunia axillaris HOM05D002826 ORTHO05D003105 1.1e-06 57.8 83 33.7
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 1.1e-06 57.8 50 44.0
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 1.1e-06 57.8 50 44.0
HanXRQChr16g0527021 Helianthus annuus HOM05D002826 ORTHO05D003105 1.4e-06 57.4 49 44.9
ATR0743G230 Amborella trichopoda HOM05D002826 ORTHO05D003105 2.4e-06 56.6 50 42.0
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 2.4e-06 56.6 50 42.0
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 2.4e-06 56.6 50 42.0
MD16G1050900 Malus domestica HOM05D002826 ORTHO05D003105 3.2e-06 56.2 50 40.0
Mapoly0005s0251 Marchantia polymorpha HOM05D002826 ORTHO05D003105 3.2e-06 56.2 60 38.3
MD13G1049900 Malus domestica HOM05D002826 ORTHO05D003105 4.1e-06 55.8 61 36.1
Pp3c5_3740 Physcomitrium patens HOM05D002826 ORTHO05D003105 5.4e-06 55.5 55 41.8
HanXRQChr11g0335291 Helianthus annuus HOM05D002826 ORTHO05D003105 7.1e-06 55.1 49 42.9
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 7.1e-06 55.1 69 46.4


User provided reference genes

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