Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010727m.g Eutrema salsugineum HOM05D003444 ORTHO05D027807 6.9e-92 340.9 205 100.0
A07p22000 Brassica napus HOM05D003444 ORTHO05D003963 4.8e-37 158.7 203 60.6
BraA07t29883Z Brassica rapa HOM05D003444 ORTHO05D003963 4.8e-37 158.7 203 60.6
BcaB02g08475 Brassica carinata HOM05D003444 ORTHO05D027807 1.6e-35 153.7 162 59.3
BcaC08g44671 Brassica carinata HOM05D003444 ORTHO05D003963 2.9e-34 149.4 205 57.1
BolC6t37380H Brassica oleracea HOM05D000214 ORTHO05D000131 1.6e-32 143.7 164 57.9
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 2.1e-32 143.3 200 58.0
C06p21950 Brassica napus HOM05D003444 ORTHO05D003963 8.0e-32 141.4 221 52.9
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 1.5e-17 94.0 129 48.1
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 1.5e-17 94.0 129 48.1
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 4.2e-17 92.4 129 47.3
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 4.2e-17 92.4 129 47.3
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 4.2e-17 92.4 129 61.2
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 5.5e-17 92.0 129 60.5
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 5.5e-17 92.0 129 58.1
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 9.5e-17 91.3 129 46.5
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 1.6e-16 90.5 129 57.4
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 1.6e-16 90.5 116 62.9
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 3.6e-16 89.4 112 50.0
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 3.6e-16 89.4 129 55.8
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 3.6e-16 89.4 129 55.8
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 1.4e-15 87.4 128 59.4
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 3.0e-15 86.3 129 54.3
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 3.0e-15 86.3 129 54.3
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 3.4e-14 82.8 116 42.2
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 5.7e-14 82.0 116 44.8
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 1.7e-13 80.5 129 56.6
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 1.7e-13 80.5 129 42.6
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 2.8e-13 79.7 129 51.2
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 2.8e-13 79.7 129 41.9
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 2.8e-13 79.7 129 52.7
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 2.8e-13 79.7 129 47.3
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 3.7e-13 79.3 129 51.9
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 3.7e-13 79.3 129 41.9
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 3.7e-13 79.3 129 42.6
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 4.9e-13 79.0 129 54.3
BcaC08g44673 Brassica carinata HOM05D003444 ORTHO05D003963 6.3e-13 78.6 130 42.3
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 6.3e-13 78.6 129 53.5
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 6.3e-13 78.6 129 42.6
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 8.3e-13 78.2 129 51.2
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 8.3e-13 78.2 129 51.2
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 8.3e-13 78.2 129 41.1
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 1.1e-12 77.8 129 55.0
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 1.8e-12 77.0 129 52.7
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 1.8e-12 77.0 129 49.6
Hma1.2p1_0046F.1_g026860 Hydrangea macrophylla HOM05D003444 ORTHO05D003963 1.8e-12 77.0 129 51.2
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 2.4e-12 76.6 129 40.3
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 2.4e-12 76.6 129 39.5
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 4.1e-12 75.9 129 40.3
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 4.1e-12 75.9 129 40.3
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 5.4e-12 75.5 165 38.8
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 7.0e-12 75.1 129 39.5
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 7.0e-12 75.1 129 39.5
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 7.0e-12 75.1 129 51.2
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 9.2e-12 74.7 129 38.8
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 9.2e-12 74.7 129 38.8
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 9.2e-12 74.7 129 38.8
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 9.2e-12 74.7 129 38.8
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.2e-11 74.3 129 40.3
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 1.2e-11 74.3 129 51.9
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 1.2e-11 74.3 129 41.1
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 1.2e-11 74.3 129 41.1
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 1.2e-11 74.3 129 40.3
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 2.0e-11 73.6 129 40.3
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 2.0e-11 73.6 129 38.8
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 2.0e-11 73.6 130 40.0
vmacro19323 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 2.0e-11 73.6 131 38.9
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 2.7e-11 73.2 129 38.8
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 2.7e-11 73.2 129 51.2
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 4.5e-11 72.4 129 52.7
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 5.9e-11 72.0 129 38.8
CSS0016754 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 5.9e-11 72.0 116 40.5
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 5.9e-11 72.0 116 40.5
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 5.9e-11 72.0 129 38.0
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 5.9e-11 72.0 129 51.2
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 5.9e-11 72.0 129 38.0
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 7.8e-11 71.6 129 39.5
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 7.8e-11 71.6 129 40.3
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 1.0e-10 71.2 129 38.0
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 1.0e-10 71.2 129 51.2
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 1.0e-10 71.2 129 49.6
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 1.0e-10 71.2 130 52.3
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 1.3e-10 70.9 116 39.7
SEGI_34823 Sequoiadendron giganteum HOM05D003444 ORTHO05D003963 1.3e-10 70.9 148 36.5
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 1.7e-10 70.5 128 50.8
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 1.7e-10 70.5 209 33.5
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 1.7e-10 70.5 129 51.9
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 1.7e-10 70.5 129 52.7
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 1.7e-10 70.5 139 38.1
QL10p008640 Quercus lobata HOM05D003444 ORTHO05D003963 2.3e-10 70.1 83 66.3
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 2.9e-10 69.7 129 38.0
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 2.9e-10 69.7 129 48.1
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 2.9e-10 69.7 129 38.8
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 3.8e-10 69.3 129 40.3
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 5.0e-10 68.9 129 38.8
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 5.0e-10 68.9 169 34.3
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 6.6e-10 68.6 129 37.2
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 6.6e-10 68.6 119 38.7
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 8.6e-10 68.2 129 53.5
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 8.6e-10 68.2 129 38.0
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.1e-09 67.8 129 47.3
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 1.1e-09 67.8 116 40.5
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 1.5e-09 67.4 129 51.2
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 1.5e-09 67.4 193 41.5
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 1.9e-09 67.0 129 51.2
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 3.3e-09 66.2 129 50.4
Lj4g0001447 Lotus japonicus HOM05D003444 ORTHO05D003963 4.3e-09 65.9 129 48.8
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 4.3e-09 65.9 116 37.9
TWI79G0312 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 4.3e-09 65.9 129 36.4
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 5.6e-09 65.5 129 37.2
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 5.6e-09 65.5 129 36.4
FAN13G0471 Fragaria x ananassa HOM05D003444 ORTHO05D003963 7.3e-09 65.1 83 45.8
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 7.3e-09 65.1 152 34.9
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 7.3e-09 65.1 83 47.0
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 7.3e-09 65.1 148 36.5
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 9.5e-09 64.7 116 52.6
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.2e-08 64.3 129 36.4
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.2e-08 64.3 129 36.4
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 1.2e-08 64.3 129 48.1
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 2.8e-08 63.2 113 40.7
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 3.6e-08 62.8 130 39.2
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 3.6e-08 62.8 72 51.4
TWI75G1457 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 3.6e-08 62.8 129 34.9
Gohir.D07G067700 Gossypium hirsutum HOM05D003444 ORTHO05D003963 4.7e-08 62.4 81 45.7
Psat0s2597g0040 Pisum sativum HOM05D003444 ORTHO05D003963 4.7e-08 62.4 129 49.6
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 6.1e-08 62.0 83 44.6
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 6.1e-08 62.0 129 49.6
Sed0013109 Sechium edule HOM05D003444 ORTHO05D003963 6.1e-08 62.0 116 36.2
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 8.0e-08 61.6 143 37.1
Zm00001eb209200 Zea mays HOM05D003444 ORTHO05D003963 8.0e-08 61.6 129 41.9
arahy.Tifrunner.gnm1.ann1.NDZJ5A Arachis hypogaea HOM05D003444 ORTHO05D003963 1.0e-07 61.2 92 42.4
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.4e-07 60.8 129 47.3
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 3.0e-07 59.7 129 49.6
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 5.2e-07 58.9 150 31.3
Cc04_g12590 Coffea canephora HOM05D003444 ORTHO05D003963 6.8e-07 58.5 92 41.3
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 8.9e-07 58.2 129 33.3
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 1.2e-06 57.8 129 34.9
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 1.2e-06 57.8 129 38.0
Oeu046785.1 Olea europaea HOM05D003444 ORTHO05D003963 2.6e-06 56.6 113 54.0
Duzib068G1143 Durio zibethinus HOM05D003444 ORTHO05D003963 3.4e-06 56.2 92 41.3
Migut.O00133 Erythranthe guttata HOM05D003444 ORTHO05D003963 5.7e-06 55.5 90 41.1
Zm00001eb231610 Zea mays HOM05D003444 ORTHO05D003963 5.7e-06 55.5 129 48.1


User provided reference genes

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