Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 7.9e-108 394.0 238 100.0
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 3.9e-99 365.2 191 93.7
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 5.7e-98 361.3 238 94.1
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 1.7e-97 359.8 238 91.6
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 6.3e-97 357.8 238 88.7
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 7.7e-95 350.9 191 89.0
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 7.7e-95 350.9 191 89.0
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 3.2e-93 345.5 192 87.5
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 3.2e-93 345.5 192 87.5
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 6.1e-92 341.3 182 92.3
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 9.4e-85 317.4 276 73.2
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 1.7e-73 280.0 187 72.2
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 3.3e-69 265.8 190 70.5
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.8e-68 262.7 151 82.1
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 1.0e-67 260.8 193 67.4
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 1.4e-67 260.4 188 67.0
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.8e-67 260.0 187 67.9
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 2.3e-67 259.6 187 67.4
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 3.0e-67 259.2 198 70.7
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 6.8e-67 258.1 189 68.8
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 5.7e-66 255.0 183 70.5
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.1e-64 250.8 192 66.7
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 1.8e-64 250.0 190 64.7
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 5.4e-64 248.4 161 74.5
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.6e-63 246.9 188 64.9
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 4.5e-63 245.4 153 76.5
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 4.5e-63 245.4 181 67.4
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.7e-62 243.4 183 66.1
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.3e-62 243.0 165 70.9
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 2.3e-62 243.0 188 64.4
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 5.0e-62 241.9 145 78.6
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 1.1e-61 240.7 184 64.7
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 1.9e-61 240.0 181 64.6
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 1.9e-61 240.0 181 64.6
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 2.5e-61 239.6 143 77.6
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 2.5e-61 239.6 174 67.8
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 2.5e-61 239.6 198 62.1
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 3.3e-61 239.2 182 64.8
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 9.5e-61 237.7 188 62.8
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 9.5e-61 237.7 151 73.5
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 9.5e-61 237.7 153 75.2
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.2e-60 237.3 150 76.7
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 1.2e-60 237.3 195 62.6
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 1.6e-60 236.9 186 66.1
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.1e-60 236.5 183 62.8
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 2.8e-60 236.1 153 73.2
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 6.1e-60 235.0 170 66.5
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 8.0e-60 234.6 182 62.6
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 1.4e-59 233.8 151 72.8
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.8e-59 233.4 141 76.6
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.8e-59 233.4 193 60.1
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 2.3e-59 233.0 180 63.3
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 2.3e-59 233.0 151 75.5
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 3.1e-59 232.6 218 55.5
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 3.1e-59 232.6 183 62.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 4.0e-59 232.3 144 72.9
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 5.2e-59 231.9 177 65.0
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 8.9e-59 231.1 182 63.7
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 8.9e-59 231.1 182 63.7
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 8.9e-59 231.1 178 64.0
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 8.9e-59 231.1 170 65.9
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 1.2e-58 230.7 173 67.6
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.2e-58 230.7 178 64.6
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 1.2e-58 230.7 188 63.3
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.2e-58 230.7 183 62.3
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 1.2e-58 230.7 173 64.7
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 1.5e-58 230.3 150 74.7
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.5e-58 230.3 188 63.8
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 2.6e-58 229.6 191 60.7
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 2.6e-58 229.6 175 65.7
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 4.4e-58 228.8 193 62.2
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 7.5e-58 228.0 185 61.6
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 2.9e-57 226.1 192 62.5
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 2.9e-57 226.1 192 60.9
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 4.9e-57 225.3 188 60.6
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 5.4e-56 221.9 170 62.9
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 7.0e-56 221.5 198 60.1
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.2e-55 220.7 134 76.9
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 2.7e-55 219.5 151 70.2
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 3.5e-55 219.2 145 71.7
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.3e-54 217.2 196 58.2
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 3.9e-54 215.7 185 60.5
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.9e-54 215.7 130 78.5
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 5.0e-54 215.3 138 73.2
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 6.6e-54 214.9 136 72.8
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 6.6e-54 214.9 173 63.0
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.9e-53 213.4 149 69.1
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.3e-53 212.6 180 61.1
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 4.3e-53 212.2 132 75.8
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 4.0e-51 205.7 190 57.9
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 6.8e-43 178.3 183 54.1
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 2.0e-42 176.8 136 59.6
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 9.9e-42 174.5 188 52.7
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 2.1e-39 166.8 175 50.9
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 1.9e-37 160.2 185 46.5
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 2.5e-37 159.8 91 79.1
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 2.0e-34 150.2 101 72.3
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 2.0e-34 150.2 141 59.6
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 7.6e-34 148.3 151 56.3
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 5.4e-32 142.1 185 46.5
BraA04t16410Z Brassica rapa HOM05D006601 ORTHO05D008281 3.3e-29 132.9 127 63.8
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 2.1e-28 130.2 127 64.6
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 2.8e-28 129.8 131 52.7
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 3.6e-28 129.4 147 49.7
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 9.9e-26 121.3 127 55.1
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 9.9e-26 121.3 127 55.1
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 8.1e-20 101.7 159 64.2
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 5.3e-19 99.0 124 45.2
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 3.4e-18 96.3 80 62.5
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 6.4e-17 92.0 102 52.9
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.2e-16 89.7 105 51.4
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 4.8e-12 75.9 55 67.3
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 2.9e-09 66.6 37 86.5
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 5.5e-08 62.4 31 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 3.5e-07 59.7 88 42.0
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 4.6e-07 59.3 31 74.2


User provided reference genes

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