Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 2.6e-136 488.8 257 100.0
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 7.2e-131 470.7 257 96.1
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 2.5e-123 445.7 257 92.2
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 1.2e-122 443.4 251 93.2
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 3.0e-121 438.7 257 91.4
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 5.7e-120 434.5 257 89.1
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 5.7e-120 434.5 257 89.1
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 9.7e-120 433.7 257 89.5
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 9.7e-120 433.7 257 89.5
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 4.8e-119 431.4 257 89.1
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 5.3e-118 427.9 257 87.9
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 1.2e-106 390.2 246 84.1
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 2.7e-106 389.0 257 81.3
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 4.3e-91 338.6 256 71.1
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 3.4e-88 328.9 258 69.4
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 1.7e-87 326.6 251 68.5
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 4.9e-87 325.1 251 68.5
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.9e-86 323.2 265 65.3
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 5.4e-86 321.6 256 69.1
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 9.2e-86 320.9 257 68.1
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 2.7e-85 319.3 243 67.5
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 6.0e-85 318.2 268 65.3
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 3.9e-84 315.5 246 69.5
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.9e-84 315.5 248 69.0
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 3.9e-84 315.5 251 66.5
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 5.0e-84 315.1 243 68.7
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 6.6e-84 314.7 246 69.1
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 6.6e-84 314.7 219 73.5
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 6.6e-84 314.7 253 66.0
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 8.6e-84 314.3 264 65.5
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.5e-83 313.5 247 66.8
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 1.5e-83 313.5 243 67.5
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.5e-83 312.8 264 66.3
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 7.3e-83 311.2 264 65.9
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 7.3e-83 311.2 235 69.4
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 7.3e-83 311.2 235 69.4
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 9.5e-83 310.8 244 66.4
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 1.6e-82 310.1 256 67.2
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.8e-82 309.3 271 65.7
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 3.6e-82 308.9 243 67.9
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 3.6e-82 308.9 263 64.3
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 4.7e-82 308.5 190 82.1
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 8.1e-82 307.8 263 65.8
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 1.1e-81 307.4 190 77.9
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.1e-81 307.4 265 64.9
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 4.0e-81 305.4 228 71.1
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 5.2e-81 305.1 245 66.9
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 5.2e-81 305.1 265 63.8
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 6.8e-81 304.7 262 66.0
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 6.8e-81 304.7 243 67.5
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 6.8e-81 304.7 261 65.5
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 1.5e-80 303.5 199 77.9
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 2.0e-80 303.1 235 66.8
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 4.4e-80 302.0 202 73.8
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.4e-78 297.0 256 63.7
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.9e-78 296.6 209 68.9
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 2.4e-78 296.2 256 64.5
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 2.4e-78 296.2 212 72.2
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 5.4e-78 295.0 256 63.7
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 5.4e-78 295.0 192 76.6
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 9.2e-78 294.3 253 62.5
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 9.2e-78 294.3 249 64.3
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 1.6e-77 293.5 203 74.4
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.1e-77 293.1 248 62.1
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 2.1e-77 293.1 202 73.8
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.0e-76 290.8 244 64.3
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.3e-76 290.4 256 64.8
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 2.3e-76 289.7 256 62.1
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 1.1e-75 287.3 250 63.6
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 1.1e-75 287.3 254 62.2
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 5.6e-75 285.0 253 62.1
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.6e-74 283.5 236 64.4
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 2.8e-74 282.7 276 58.3
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 4.7e-74 282.0 246 61.4
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.8e-73 280.0 241 62.7
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 3.1e-73 279.3 248 60.5
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 3.1e-73 279.3 248 60.5
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 6.8e-73 278.1 245 63.3
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 2.0e-72 276.6 266 60.9
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 2.2e-71 273.1 237 60.3
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 5.4e-70 268.5 264 58.3
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 9.2e-70 267.7 203 66.5
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.6e-69 266.9 197 68.5
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 7.8e-69 264.6 239 61.1
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 1.7e-68 263.5 252 59.5
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.7e-68 263.5 260 58.1
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.7e-68 263.5 269 56.1
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 3.9e-68 262.3 229 63.3
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 5.1e-68 261.9 261 57.9
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 6.6e-68 261.5 181 72.9
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 6.6e-68 261.5 269 56.1
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 1.1e-67 260.8 271 54.2
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.9e-67 260.0 269 56.1
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.5e-67 259.6 239 60.3
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 7.3e-67 258.1 250 58.8
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 9.6e-67 257.7 237 60.8
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 8.1e-66 254.6 163 79.1
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 1.4e-65 253.8 189 66.7
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 1.8e-65 253.4 222 59.5
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 4.0e-65 252.3 201 62.7
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 3.4e-64 249.2 258 58.1
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.3e-63 247.3 244 54.5
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 8.4e-63 244.6 230 60.9
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 8.4e-63 244.6 248 55.2
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 1.6e-61 240.4 269 54.3
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 5.8e-56 221.9 128 89.8
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 2.9e-55 219.5 213 59.2
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 6.4e-55 218.4 175 60.6
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 5.4e-54 215.3 262 50.4
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 2.7e-53 213.0 265 46.8
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.0e-52 211.1 149 71.1
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 9.0e-49 198.0 180 61.1
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.9e-30 137.1 102 68.6
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 5.0e-23 112.5 95 63.2
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 6.7e-20 102.1 112 50.9
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-17 93.2 127 40.2
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-16 89.7 104 40.4
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.4e-16 89.7 71 60.6
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.8e-09 67.4 54 61.1
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 2.4e-09 67.0 43 72.1
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 1.0e-07 61.6 68 50.0
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 6.5e-07 58.9 38 60.5


User provided reference genes

Program Settings