Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 6.7e-142 507.7 324 100.0
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 3.0e-110 402.5 328 85.7
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 2.1e-103 379.8 333 79.9
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 1.5e-101 373.6 342 75.7
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 1.7e-97 360.1 328 76.8
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 2.3e-97 359.8 337 73.9
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 6.6e-97 358.2 329 79.0
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 1.2e-95 354.0 329 78.4
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 1.0e-94 350.9 328 75.0
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 1.0e-94 350.9 328 75.0
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 4.7e-87 325.5 325 76.6
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 5.8e-85 318.5 328 71.6
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 1.2e-82 310.8 336 67.6
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 1.4e-78 297.4 311 75.2
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 2.3e-70 270.0 334 68.0
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 8.9e-62 241.5 335 64.2
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 5.8e-61 238.8 341 58.9
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 2.9e-60 236.5 358 55.9
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 4.2e-59 232.6 334 58.1
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 5.4e-59 232.3 340 60.3
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 1.7e-57 227.3 340 60.9
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 5.1e-57 225.7 362 54.1
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 1.1e-56 224.6 373 53.4
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.5e-56 224.2 347 59.1
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.5e-56 224.2 347 59.1
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 3.3e-56 223.0 355 58.0
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 5.6e-56 222.2 339 55.8
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 9.6e-56 221.5 328 56.7
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 9.6e-56 221.5 344 58.4
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 1.6e-55 220.7 347 54.2
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 2.8e-55 219.9 371 56.6
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 2.8e-55 219.9 346 52.6
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 4.8e-55 219.2 350 58.0
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 2.4e-54 216.9 360 56.9
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 3.1e-54 216.5 366 56.3
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 4.0e-54 216.1 328 46.6
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 5.3e-54 215.7 370 54.9
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 6.9e-54 215.3 374 53.7
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 6.9e-54 215.3 330 59.7
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.2e-53 214.5 337 58.8
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 1.5e-53 214.2 328 57.3
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 2.0e-53 213.8 366 54.6
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 4.4e-53 212.6 344 59.0
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 4.4e-53 212.6 326 57.1
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 5.8e-53 212.2 345 58.6
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 5.8e-53 212.2 335 49.9
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 7.6e-53 211.8 363 56.7
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 9.9e-53 211.5 350 58.3
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 1.3e-52 211.1 352 55.4
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 1.7e-52 210.7 376 54.5
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 3.8e-52 209.5 331 46.8
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 6.4e-52 208.8 327 54.1
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 1.4e-51 207.6 368 53.8
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 7.1e-51 205.3 376 53.7
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 1.6e-50 204.1 343 53.6
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 1.6e-50 204.1 353 51.6
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 1.6e-50 204.1 339 57.2
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 3.5e-50 203.0 385 52.5
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 3.5e-50 203.0 365 55.6
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 4.6e-50 202.6 356 55.9
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 6.0e-50 202.2 352 56.0
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 6.0e-50 202.2 377 55.2
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 7.8e-50 201.8 360 53.3
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.0e-49 201.4 353 55.8
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.3e-49 200.3 353 54.4
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 3.0e-49 199.9 352 55.7
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 6.6e-49 198.7 348 56.3
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 1.9e-48 197.2 368 52.7
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.5e-48 196.8 346 56.4
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 4.3e-48 196.1 368 40.5
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 1.3e-47 194.5 359 54.9
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 4.8e-47 192.6 360 51.9
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 9.9e-45 184.9 380 50.0
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 2.2e-44 183.7 361 50.4
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 2.2e-44 183.7 342 52.3
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 2.9e-44 183.3 330 53.0
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 4.9e-44 182.6 358 52.0
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 8.4e-44 181.8 372 52.7
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.1e-43 181.4 398 47.0
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 2.4e-43 180.3 352 50.3
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 3.2e-43 179.9 327 41.3
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 7.1e-43 178.7 327 40.7
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 9.3e-43 178.3 348 53.4
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 6.0e-42 175.6 391 46.3
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 9.6e-40 168.3 330 40.9
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 8.1e-39 165.2 378 46.8
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 6.9e-38 162.2 287 55.7
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 1.5e-37 161.0 348 47.1
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 3.4e-37 159.8 336 48.5
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 4.2e-35 152.9 161 54.7
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 1.6e-34 151.0 158 53.2
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 4.6e-34 149.4 396 46.2
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 7.9e-34 148.7 329 43.5
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 4.3e-32 142.9 149 56.4
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 8.2e-31 138.7 268 56.7
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 3.2e-27 126.7 245 54.7
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 7.1e-27 125.6 206 42.2
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 1.0e-25 121.7 124 54.0
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 5.1e-25 119.4 126 54.0
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 5.7e-24 115.9 121 50.4
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 1.5e-21 107.8 284 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 1.0e-20 105.1 401 31.4
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 1.3e-20 104.8 153 45.8
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 1.9e-19 100.9 205 36.1
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 2.5e-19 100.5 191 35.6
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 1.2e-18 98.2 495 33.1
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 3.6e-18 96.7 277 44.8
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 5.1e-17 92.8 153 39.9
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 1.1e-16 91.7 106 48.1
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 7.4e-16 89.0 92 52.2
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 1.7e-15 87.8 92 53.3
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 2.2e-15 87.4 84 63.1
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 9.1e-14 82.0 106 46.2
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 5.0e-12 76.3 93 55.9
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.1e-11 75.1 68 70.6
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 2.7e-10 70.5 114 40.4
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.7e-10 70.5 66 68.2
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 3.6e-10 70.1 113 39.8
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.0e-09 68.6 110 40.0
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.9e-09 66.6 80 47.5
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.3e-08 63.5 123 37.4
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 4.4e-08 63.2 114 35.1
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 4.4e-08 63.2 88 47.7
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-06 58.5 107 39.3
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 4.1e-06 56.6 73 45.2
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 9.1e-06 55.5 44 56.8


User provided reference genes

Program Settings