Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 3.0e-207 724.9 359 100.0
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 1.0e-175 620.2 360 86.7
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 2.3e-175 619.0 360 86.7
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 1.0e-167 593.6 360 83.9
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 5.6e-166 587.8 356 83.4
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 2.8e-165 585.5 358 83.0
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 1.0e-159 567.0 358 81.0
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 1.5e-158 563.1 361 80.9
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 1.9e-158 562.8 342 83.3
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 2.8e-157 558.9 361 81.4
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 1.8e-156 556.2 342 82.5
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 8.5e-146 520.8 377 71.9
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 5.1e-135 485.0 362 68.2
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 5.0e-114 415.2 266 82.7
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 2.8e-109 399.4 365 58.4
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 4.5e-107 392.1 366 59.3
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 2.5e-105 386.3 370 57.0
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 1.2e-104 384.0 368 57.3
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 7.5e-102 374.8 370 55.9
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 2.8e-101 372.9 373 57.4
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 2.4e-100 369.8 372 55.4
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.0e-99 366.7 364 53.6
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 1.3e-98 364.0 380 52.6
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 2.9e-98 362.8 359 55.7
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 2.9e-98 362.8 372 54.0
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 6.6e-98 361.7 361 53.2
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 4.3e-97 359.0 359 54.0
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 5.6e-97 358.6 350 55.1
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 9.5e-97 357.8 367 51.8
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 2.8e-96 356.3 368 52.2
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 3.6e-96 355.9 374 51.9
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 8.0e-96 354.8 276 68.8
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 8.0e-96 354.8 366 52.2
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 1.4e-95 354.0 356 53.7
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 1.8e-95 353.6 369 53.1
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 3.1e-95 352.8 372 52.7
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 3.1e-95 352.8 363 54.0
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 1.5e-94 350.5 360 52.8
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 2.0e-94 350.1 367 51.5
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 3.4e-94 349.4 361 52.1
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 5.8e-94 348.6 367 53.1
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 9.8e-94 347.8 375 54.1
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 9.8e-94 347.8 368 54.6
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 1.3e-93 347.4 372 50.8
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 1.3e-93 347.4 372 51.6
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 2.2e-93 346.7 372 51.3
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 2.9e-93 346.3 344 54.1
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 1.1e-92 344.4 372 53.5
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 1.4e-92 344.0 356 52.5
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 3.2e-92 342.8 347 55.0
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 3.2e-92 342.8 366 51.6
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 9.2e-92 341.3 364 52.5
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 1.6e-91 340.5 347 53.3
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 2.0e-91 340.1 363 50.1
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 4.6e-91 339.0 370 50.8
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 7.8e-91 338.2 364 51.4
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 7.8e-91 338.2 370 50.5
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 2.3e-90 336.7 365 51.2
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 5.0e-90 335.5 361 52.6
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 5.0e-90 335.5 369 50.7
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 1.5e-89 334.0 373 50.4
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 3.3e-89 332.8 353 52.1
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 7.3e-89 331.6 366 50.8
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 9.5e-89 331.3 371 51.8
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 8.0e-88 328.2 371 48.2
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 1.1e-87 327.8 343 51.3
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 2.0e-86 323.6 362 50.6
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 2.0e-86 323.6 336 52.4
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 4.4e-86 322.4 361 49.3
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 1.3e-85 320.9 340 50.6
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 1.2e-83 314.3 309 56.6
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 1.6e-83 313.9 364 48.4
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.6e-83 312.4 316 52.2
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 4.6e-83 312.4 309 57.9
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 1.1e-81 307.8 370 47.8
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.3e-77 294.3 368 47.8
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.1e-76 291.2 319 51.4
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 2.7e-75 286.6 276 58.7
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 1.1e-73 281.2 356 45.5
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 2.5e-73 280.0 254 57.1
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 1.2e-72 277.7 301 51.5
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 4.7e-72 275.8 341 47.8
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 1.1e-71 274.6 281 57.7
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 3.1e-71 273.1 279 54.8
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 7.6e-70 268.5 365 45.8
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 2.9e-69 266.5 351 47.0
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 2.7e-67 260.0 276 52.2
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 4.6e-67 259.2 293 48.5
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 6.0e-67 258.8 337 42.7
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 1.7e-66 257.3 279 50.2
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 8.7e-66 255.0 289 50.2
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 4.8e-64 249.2 282 51.4
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 6.9e-63 245.4 358 42.2
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 1.7e-61 240.7 248 55.2
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 1.0e-58 231.5 280 47.5
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 7.1e-52 208.8 374 37.2
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 1.0e-50 204.9 360 37.5
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 3.0e-50 203.4 171 59.1
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 5.8e-46 189.1 215 51.2
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 4.9e-45 186.0 330 38.2
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 8.4e-45 185.3 309 41.1
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 5.5e-44 182.6 316 39.9
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 1.2e-43 181.4 344 34.6
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.6e-40 171.0 196 52.0
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 3.0e-34 150.2 247 38.5
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 4.3e-33 146.4 226 43.4
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 3.2e-28 130.2 225 38.2
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 7.9e-27 125.6 193 37.8
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 3.0e-26 123.6 389 29.6
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 4.3e-25 119.8 162 43.8
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 7.7e-22 109.0 94 57.4
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 5.5e-20 102.8 238 32.8
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 1.5e-17 94.7 85 54.1
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 1.7e-16 91.3 131 43.5
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-16 91.3 140 41.4
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.2e-14 85.1 83 49.4
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 5.9e-14 82.8 88 38.6
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 3.8e-13 80.1 152 36.2
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 4.7e-11 73.2 180 28.3
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 3.9e-10 70.1 114 37.7
PRCOL_00002155 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 3.7e-08 63.5 187 29.9
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 1.4e-07 61.6 67 46.3
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.8e-07 61.2 37 70.3


User provided reference genes

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