Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.9e-214 748.8 365 100.0
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.4e-191 672.9 366 90.7
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.6e-190 668.7 367 90.2
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 1.7e-189 666.0 366 90.2
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 2.2e-189 665.6 368 90.8
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.2e-189 665.6 366 90.2
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.5e-185 652.9 369 88.6
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 2.7e-184 648.7 367 88.6
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 3.3e-182 641.7 368 87.0
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.8e-181 638.6 369 86.2
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 3.7e-181 638.3 371 87.1
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 6.3e-181 637.5 368 87.5
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 7.0e-180 634.0 370 85.9
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 9.1e-180 633.6 368 85.6
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 9.1e-180 633.6 368 85.6
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 5.0e-178 627.9 365 84.1
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 8.5e-178 627.1 364 84.3
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-177 626.7 367 86.1
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.2e-174 616.7 366 83.1
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.5e-174 616.3 366 83.1
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.4e-174 615.1 365 82.7
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 8.3e-173 610.5 367 81.7
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.1e-172 608.6 367 81.5
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 7.5e-166 587.4 365 78.1
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.0e-159 567.0 365 76.7
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 5.7e-158 561.2 339 85.5
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.4e-156 555.8 366 75.4
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 7.0e-156 554.3 368 74.2
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 4.5e-155 551.6 365 75.1
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 5.9e-155 551.2 366 74.6
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.3e-154 550.1 369 74.0
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 2.3e-154 549.3 370 73.2
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 5.0e-154 548.1 364 73.4
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 6.6e-154 547.7 334 79.0
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 8.6e-154 547.4 312 82.1
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.9e-153 546.2 369 73.4
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.5e-153 545.8 370 72.4
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 2.5e-153 545.8 372 72.8
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 5.6e-153 544.7 370 71.9
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 9.5e-153 543.9 366 73.5
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.2e-152 543.5 354 75.1
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.2e-152 543.5 296 85.1
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.6e-152 543.1 320 80.9
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.8e-152 542.3 373 72.9
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.8e-152 542.3 323 79.6
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 6.1e-152 541.2 369 72.1
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 8.0e-152 540.8 367 73.6
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.0e-151 540.4 374 73.0
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 5.2e-151 538.1 368 71.7
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.2e-150 537.0 367 71.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.2e-150 537.0 321 79.8
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.5e-150 536.6 312 80.4
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.0e-150 536.2 368 72.0
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.4e-150 535.4 318 80.2
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 4.4e-150 535.0 365 71.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 7.5e-150 534.3 365 72.1
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 2.9e-149 532.3 313 79.6
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.9e-149 532.3 365 72.6
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 3.7e-149 531.9 345 72.8
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 4.9e-149 531.6 319 79.3
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.3e-149 530.8 365 72.1
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.1e-148 530.4 384 70.3
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.9e-148 529.6 315 79.7
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 5.4e-148 528.1 309 79.3
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 7.0e-148 527.7 315 79.4
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 3.5e-147 525.4 315 77.1
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.6e-147 525.0 369 71.5
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 6.0e-147 524.6 367 71.4
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.0e-146 523.9 363 71.3
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 3.0e-146 522.3 365 70.7
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 3.9e-146 521.9 363 68.6
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.1e-145 520.4 370 68.6
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.5e-145 520.0 366 69.7
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.9e-145 519.6 360 69.7
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.9e-145 519.6 365 70.4
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 4.3e-145 518.5 365 69.0
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 9.5e-145 517.3 315 77.1
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.2e-144 516.9 374 69.5
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.2e-144 516.9 365 68.5
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.1e-144 516.2 363 68.0
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.8e-144 515.8 363 69.1
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 3.6e-144 515.4 367 75.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 3.6e-144 515.4 365 67.9
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 3.6e-144 515.4 353 72.2
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 3.6e-144 515.4 366 68.6
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 4.7e-144 515.0 365 67.7
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 8.0e-144 514.2 299 79.6
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.8e-143 513.1 367 68.9
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.8e-143 513.1 365 69.0
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.8e-143 513.1 314 78.0
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 4.0e-143 511.9 393 65.1
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 6.8e-143 511.1 372 68.5
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 2.0e-142 509.6 365 67.7
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 9.8e-142 507.3 296 78.0
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.3e-141 506.9 368 67.9
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 2.9e-141 505.8 339 79.4
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.9e-141 505.8 361 67.9
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 8.3e-141 504.2 311 75.9
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.2e-140 502.3 367 68.9
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 9.2e-140 500.7 334 70.4
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.7e-139 499.2 366 66.1
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 6.0e-139 498.0 363 66.9
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.7e-138 496.5 360 69.4
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 2.3e-138 496.1 358 67.9
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.5e-137 493.4 326 72.4
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.4e-135 486.9 319 73.4
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 2.6e-134 482.6 313 72.5
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 3.2e-132 475.7 390 64.1
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 7.1e-132 474.6 336 70.2
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.1e-131 473.0 332 70.5
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.9e-130 468.8 483 52.2
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.5e-129 466.8 391 61.1
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.8e-127 459.9 277 79.8
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 4.2e-124 448.7 292 71.6
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.9e-122 442.2 326 66.3
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.1e-120 436.4 286 71.7
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 4.2e-116 422.2 325 65.2
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 3.5e-115 419.1 339 69.9
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.3e-109 400.6 291 65.3
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.8e-109 399.1 242 76.4
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 2.1e-107 393.3 285 66.3
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 2.2e-101 373.2 281 65.1
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 2.9e-101 372.9 285 62.5
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 7.1e-100 368.2 252 70.6
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 9.6e-97 357.8 257 70.4
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 6.9e-95 351.7 294 58.2
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.0e-94 350.1 256 67.6
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 5.0e-85 318.9 290 56.6
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.2e-77 293.5 168 81.5
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.8e-74 283.9 160 82.5
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.0e-65 253.8 229 56.3
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 5.2e-58 229.2 147 76.2
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.5e-57 227.6 127 81.1
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 2.6e-57 226.9 127 79.5
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.7e-54 216.9 332 42.2
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-51 207.6 147 70.7
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 5.7e-49 199.1 147 69.4
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.3e-44 183.0 100 80.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 7.3e-44 182.2 147 63.9
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 9.8e-41 171.8 95 80.0
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.8e-35 153.7 108 66.7
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.6e-27 127.9 72 81.9
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 4.1e-23 113.2 67 79.1
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 4.1e-23 113.2 67 79.1
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.1e-22 110.9 64 81.2
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 9.5e-20 102.1 57 78.9
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.0e-17 94.4 65 66.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 2.2e-16 90.9 45 88.9
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 4.9e-16 89.7 45 88.9
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 8.4e-16 89.0 44 90.9
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 3.3e-12 77.0 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.3e-12 77.0 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 5.8e-09 66.2 37 83.8
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 5.4e-07 59.7 51 60.8
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 7.1e-07 59.3 117 29.9
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 9.3e-07 58.9 77 46.8


User provided reference genes

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