Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 2.4e-205 718.8 409 100.0
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 2.5e-178 629.0 419 86.2
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 2.4e-176 622.5 408 89.5
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 6.8e-176 620.9 417 88.2
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 3.8e-174 615.1 418 87.3
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 3.8e-174 615.1 400 89.8
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 4.9e-174 614.8 432 84.7
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 8.4e-174 614.0 414 86.7
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 5.4e-173 611.3 412 85.4
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 4.6e-172 608.2 415 86.3
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 1.0e-171 607.1 413 85.2
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 6.6e-171 604.4 416 80.8
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.4e-168 596.7 402 78.4
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 1.4e-165 586.6 412 83.3
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 1.4e-165 586.6 412 83.3
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.9e-150 535.0 407 69.5
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 1.9e-146 523.1 410 74.1
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.9e-146 523.1 403 68.0
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 6.1e-140 501.5 303 87.5
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 6.1e-140 501.5 303 87.5
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.9e-135 485.0 401 63.3
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.3e-134 483.8 401 63.1
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.3e-134 483.8 401 63.1
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 4.2e-133 478.8 401 62.3
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 7.2e-133 478.0 404 62.1
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.2e-132 477.2 403 67.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.6e-132 476.9 405 62.2
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 3.6e-132 475.7 403 62.5
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 1.0e-131 474.2 396 62.6
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.1e-130 470.7 403 62.3
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 1.1e-130 470.7 398 61.8
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 2.0e-130 469.9 399 70.4
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 2.5e-130 469.5 410 60.5
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 4.3e-130 468.8 395 61.3
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.3e-129 467.2 394 60.2
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.2e-129 466.5 398 62.1
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 2.8e-129 466.1 403 62.3
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 4.8e-129 465.3 401 60.6
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 6.3e-129 464.9 400 70.2
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 8.2e-129 464.5 403 62.3
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 8.2e-129 464.5 406 61.6
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.8e-128 463.4 448 57.1
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 2.4e-128 463.0 401 62.6
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 5.3e-128 461.8 325 70.5
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 5.3e-128 461.8 455 56.7
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 6.9e-128 461.5 412 68.0
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 9.1e-128 461.1 396 60.4
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.2e-127 460.7 396 60.9
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.0e-127 459.9 399 59.6
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 2.0e-127 459.9 397 62.0
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 2.6e-127 459.5 399 61.2
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 4.5e-127 458.8 325 71.1
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.0e-126 457.6 403 61.5
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.3e-126 457.2 402 60.4
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.3e-126 457.2 404 61.6
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 1.7e-126 456.8 400 61.8
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 1.7e-126 456.8 399 60.7
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 3.8e-126 455.7 399 62.7
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 8.5e-126 454.5 321 70.4
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.1e-125 454.1 322 69.3
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.1e-125 454.1 418 59.6
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 4.2e-125 452.2 386 62.4
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 1.6e-124 450.3 404 60.1
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 5.1e-123 445.3 445 56.2
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 8.8e-123 444.5 414 59.4
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 5.7e-122 441.8 410 58.3
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 5.7e-122 441.8 406 64.0
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 9.7e-122 441.0 445 55.7
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.3e-121 440.7 436 56.4
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 8.2e-121 438.0 400 59.0
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.1e-120 437.6 395 61.0
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.8e-120 436.8 399 57.9
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 3.1e-120 436.0 448 54.9
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 9.1e-120 434.5 408 57.8
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 1.5e-119 433.7 397 57.7
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.0e-118 431.0 375 62.1
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 1.3e-118 430.6 384 60.2
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.9e-117 426.8 382 57.9
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.9e-117 426.8 344 61.9
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 2.1e-116 423.3 301 72.1
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 3.6e-116 422.5 326 64.7
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 4.7e-116 422.2 300 69.7
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.4e-115 420.6 301 72.1
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.3e-115 419.9 391 57.8
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 5.2e-115 418.7 301 71.4
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 6.7e-115 418.3 326 64.1
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 2.6e-114 416.4 394 57.1
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 4.4e-114 415.6 327 63.0
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 7.4e-114 414.8 369 69.6
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.3e-113 414.1 382 56.8
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 2.4e-112 409.8 413 55.9
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 7.0e-112 408.3 318 63.8
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.9e-111 405.2 382 56.5
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 1.2e-108 397.5 346 60.7
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 3.6e-108 396.0 340 60.6
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 4.7e-108 395.6 286 69.6
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 4.7e-108 395.6 325 63.7
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 3.7e-105 386.0 330 61.8
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.1e-104 384.4 336 59.8
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.2e-103 380.9 396 51.8
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 3.6e-100 369.4 396 50.3
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.6e-100 369.4 318 61.3
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.0e-100 368.2 318 60.7
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.4e-99 367.5 318 60.7
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.2e-99 365.5 318 60.7
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.2e-98 364.4 318 60.4
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 4.4e-98 362.5 315 58.1
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.1e-96 355.9 318 57.5
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 1.6e-95 354.0 340 54.7
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 1.3e-94 350.9 340 53.8
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 6.8e-91 338.6 270 63.0
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.1e-80 304.7 310 49.7
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.1e-72 278.1 253 58.5
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.7e-70 270.8 284 53.9
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 5.2e-67 259.2 186 67.2
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 8.3e-65 251.9 270 50.7
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.6e-61 239.2 253 51.8
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 3.4e-58 229.9 256 50.8
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 1.2e-55 221.5 384 36.5
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.7e-54 217.6 153 72.5
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 6.2e-52 209.1 150 66.7
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.7e-47 193.7 149 67.8
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 6.6e-46 189.1 129 73.6
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 4.9e-41 172.9 120 65.8
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 7.1e-40 169.1 126 67.5
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-39 167.9 115 70.4
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 4.2e-24 116.7 80 71.2
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 4.8e-20 103.2 73 68.5
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.1e-16 92.0 147 39.5
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.2e-12 77.8 66 63.6
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 2.8e-12 77.4 416 21.6
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.7e-09 68.2 55 67.3
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 2.7e-07 60.8 49 65.3
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 6.1e-07 59.7 50 60.0


User provided reference genes

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