Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.4e-240 833.9 427 100.0
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 6.0e-207 724.2 428 85.3
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.8e-204 715.3 429 84.4
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.7e-199 698.7 429 83.4
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 4.6e-199 698.0 431 82.1
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.0e-198 695.3 429 83.7
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.9e-198 694.9 431 81.9
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 3.9e-198 694.9 431 81.9
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.9e-198 694.9 431 81.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.2e-192 674.9 437 80.1
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 3.4e-170 602.1 436 71.8
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.2e-169 599.4 436 71.1
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.2e-168 595.1 436 69.5
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.5e-168 594.7 438 70.8
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 7.2e-168 594.3 438 71.0
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.3e-165 585.5 441 68.3
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-163 579.7 429 68.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 3.1e-163 578.9 443 68.8
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.4e-162 575.5 429 67.1
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-160 569.7 430 66.3
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-160 569.7 429 66.7
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 3.2e-160 568.9 431 66.4
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 5.5e-160 568.2 429 66.4
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-159 567.0 434 66.4
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 2.1e-159 566.2 430 66.7
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 2.1e-159 566.2 430 66.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 7.9e-159 564.3 434 66.1
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-158 563.5 433 67.4
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.4e-158 563.5 434 66.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.8e-158 563.1 434 65.9
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-158 562.4 434 66.8
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-158 562.4 434 66.8
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 4.8e-156 555.1 430 65.3
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-155 552.7 430 65.3
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 7.7e-154 547.7 441 65.8
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.3e-153 547.0 440 66.1
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-150 537.0 428 68.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-147 527.3 434 62.7
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 5.2e-142 508.4 467 59.1
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.9e-137 492.7 460 56.1
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.1e-136 490.7 433 58.2
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.5e-136 490.3 468 55.8
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.2e-135 487.3 460 55.7
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-134 483.4 458 56.8
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.3e-134 483.0 458 56.8
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.0e-134 482.6 444 55.4
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 8.8e-134 481.1 456 55.7
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 2.6e-133 479.6 460 55.9
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.6e-133 479.6 458 56.6
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.3e-132 477.2 466 54.9
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.2e-132 476.5 467 54.4
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.8e-132 476.1 467 54.4
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 4.8e-132 475.3 471 54.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.4e-131 471.9 457 55.1
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 2.0e-130 469.9 468 53.8
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.0e-130 469.9 466 54.1
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.5e-130 468.8 479 52.4
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.9e-130 468.4 457 54.9
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 5.9e-130 468.4 457 54.7
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.7e-130 468.0 460 53.9
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 7.7e-130 468.0 470 52.3
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.9e-129 466.1 463 54.4
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.6e-129 464.9 457 54.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 6.6e-129 464.9 471 52.4
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.2e-128 461.5 466 53.9
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 7.2e-128 461.5 446 54.3
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.5e-128 461.1 456 52.9
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 9.5e-128 461.1 467 52.7
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.2e-127 460.7 474 52.3
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-127 460.3 466 53.6
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 2.8e-127 459.5 471 53.1
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 3.6e-127 459.1 408 56.4
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 8.0e-127 458.0 463 53.8
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.0e-126 457.6 435 54.7
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.0e-126 457.6 469 52.2
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.4e-126 457.2 442 53.8
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 2.3e-126 456.4 463 52.5
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.3e-126 456.4 454 53.1
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.0e-126 456.1 442 55.0
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 3.0e-126 456.1 406 57.4
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.0e-126 456.1 464 53.7
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.0e-126 456.1 467 53.1
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.0e-126 455.7 468 52.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.8e-126 454.9 454 52.9
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 8.9e-126 454.5 467 52.2
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.2e-125 454.1 468 51.3
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.7e-124 450.3 456 51.3
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 4.9e-124 448.7 440 54.3
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 8.3e-124 448.0 397 56.2
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.4e-123 447.2 413 54.7
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.1e-123 445.7 470 52.1
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.2e-122 444.1 470 50.2
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.6e-122 443.7 442 52.5
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.6e-122 443.7 397 55.7
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.6e-122 443.7 445 53.0
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 7.8e-122 441.4 443 54.2
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.7e-121 440.3 417 54.2
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.3e-121 439.9 472 50.2
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.3e-121 439.9 454 52.6
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 5.0e-121 438.7 450 50.4
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 5.0e-121 438.7 437 52.6
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.9e-120 436.8 417 54.2
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.3e-120 436.0 414 54.3
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 7.3e-120 434.9 399 53.9
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 2.8e-119 433.0 468 51.1
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.1e-119 431.8 416 53.4
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.1e-119 431.8 444 50.9
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.0e-118 431.0 453 51.4
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.3e-118 429.9 393 56.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 3.1e-118 429.5 460 50.4
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 6.8e-118 428.3 453 50.1
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 8.9e-118 427.9 414 52.7
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.0e-117 426.8 446 50.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.2e-116 423.3 465 47.7
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 4.9e-116 422.2 449 50.1
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 8.3e-116 421.4 466 48.9
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 8.3e-116 421.4 474 50.0
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.9e-115 420.2 446 50.0
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 2.4e-115 419.9 415 52.8
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 4.1e-115 419.1 450 47.3
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.0e-113 414.5 449 49.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.0e-113 412.9 461 49.9
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 3.9e-113 412.5 415 51.6
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 5.0e-113 412.1 452 48.0
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 5.0e-113 412.1 423 48.9
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.5e-112 409.8 457 48.1
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 3.3e-112 409.5 395 54.2
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 9.5e-112 407.9 415 52.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.6e-111 407.1 447 49.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.8e-111 406.4 440 49.5
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.8e-110 403.7 442 48.0
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.0e-110 402.5 460 47.4
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 4.0e-110 402.5 397 50.6
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 5.2e-110 402.1 399 53.4
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 7.5e-109 398.3 397 50.4
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-108 397.5 426 53.1
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.9e-108 396.4 465 48.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 4.9e-108 395.6 467 49.3
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.0e-105 386.3 400 50.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.2e-101 374.4 417 47.5
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.1e-99 367.9 416 48.3
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.9e-99 367.1 384 50.3
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.0e-97 361.3 415 47.5
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.7e-97 360.5 433 45.5
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 3.0e-97 359.8 415 48.4
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.5e-96 357.5 291 60.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.5e-96 357.5 291 60.1
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.4e-85 319.3 412 42.2
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.4e-83 314.3 453 38.9
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.4e-83 312.4 426 42.7
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.5e-82 309.7 426 41.8
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.0e-82 308.9 426 41.8
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.6e-80 301.6 426 39.9
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.4e-75 285.8 415 39.5
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 4.6e-74 282.7 204 67.6
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 6.0e-74 282.3 204 67.6
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 9.0e-62 241.9 166 72.9
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-58 231.5 212 52.8
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-57 227.6 325 39.1
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.3e-52 211.5 276 44.9
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.8e-46 191.0 163 54.6
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 8.0e-34 149.1 199 47.2
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.8e-33 147.9 146 53.4
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-30 138.3 279 37.3
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 7.2e-27 125.9 137 43.8
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.2e-24 118.6 125 52.8
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.1e-22 112.1 304 29.9
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.6e-21 108.2 90 61.1
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.5e-19 101.7 92 58.7
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 2.0e-13 81.3 99 47.5
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 9.8e-08 62.4 38 65.8


User provided reference genes

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