Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.4e-246 855.1 449 100.0
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.3e-164 582.8 460 72.8
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.1e-154 549.7 431 74.9
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 4.7e-154 548.5 428 75.5
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.4e-153 547.0 453 70.2
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.4e-152 542.3 452 72.1
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 4.4e-152 542.0 432 74.3
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 5.1e-148 528.5 442 71.5
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.7e-127 460.3 396 67.7
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 5.5e-126 455.3 449 60.6
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 7.1e-126 454.9 417 66.2
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 6.5e-119 431.8 445 60.0
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.5e-115 419.9 475 55.8
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 2.5e-115 419.9 474 54.6
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.4e-113 413.3 474 55.3
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.9e-108 396.0 473 52.9
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.4e-102 377.5 471 52.2
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.4e-100 370.9 449 54.6
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 3.9e-92 342.8 430 51.2
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 5.3e-89 332.4 426 51.4
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-88 331.3 419 50.8
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 4.5e-88 329.3 426 50.2
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 5.9e-88 328.9 479 45.1
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.7e-87 327.4 425 49.6
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-85 321.2 481 48.6
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.7e-85 320.1 485 43.7
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 8.0e-85 318.5 478 48.1
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.2e-82 310.5 480 46.0
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.4e-81 307.8 484 47.5
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 5.3e-81 305.8 425 50.1
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.5e-80 302.8 481 42.6
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 7.7e-80 302.0 480 42.5
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.0e-79 301.6 481 42.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 6.5e-79 298.9 477 43.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.2e-77 294.7 473 42.5
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.6e-77 294.3 474 43.7
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.7e-77 292.7 486 42.4
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.8e-76 290.8 479 40.9
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 2.3e-76 290.4 479 43.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 6.8e-76 288.9 477 42.8
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.8e-76 288.5 473 41.6
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 7.5e-75 285.4 485 43.9
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.1e-73 281.6 492 42.9
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 5.4e-73 279.3 482 42.9
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 2.7e-72 276.9 476 42.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.5e-72 276.6 481 41.8
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.9e-70 270.8 489 40.1
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 9.5e-70 268.5 479 40.5
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 9.5e-70 268.5 493 40.8
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 8.0e-69 265.4 487 40.0
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.8e-68 264.2 437 42.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.3e-68 263.8 483 42.2
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 5.2e-68 262.7 483 39.5
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 8.9e-68 261.9 432 43.3
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.4e-67 260.0 470 39.4
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 7.5e-67 258.8 482 39.8
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.7e-66 257.7 488 40.2
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 6.3e-66 255.8 477 40.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 8.3e-66 255.4 470 39.6
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.8e-65 254.2 471 39.9
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 4.1e-65 253.1 467 42.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 9.2e-65 251.9 459 40.3
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.2e-64 251.5 484 39.5
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.0e-63 248.4 471 40.6
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.0e-63 248.4 486 38.9
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.3e-63 247.3 487 39.8
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.5e-62 243.8 469 40.3
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.2e-61 241.5 466 39.5
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.6e-61 240.0 480 40.4
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 4.7e-61 239.6 487 38.6
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.0e-60 238.4 471 38.4
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.1e-60 236.9 471 40.6
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 3.1e-60 236.9 487 39.4
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 4.0e-60 236.5 481 37.4
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 8.9e-60 235.3 475 38.3
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 4.4e-59 233.0 469 37.5
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.9e-58 230.3 482 35.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 3.7e-58 229.9 466 39.3
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 6.4e-58 229.2 469 38.2
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.1e-57 228.4 483 37.7
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-57 228.0 465 38.7
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 5.4e-57 226.1 486 37.2
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.2e-56 224.9 481 37.2
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.6e-56 223.0 468 37.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 3.9e-55 219.9 472 37.1
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.5e-54 218.0 441 40.4
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.9e-54 217.6 491 36.5
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 4.7e-53 213.0 486 38.1
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.7e-53 213.0 471 37.8
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.4e-52 211.5 472 36.2
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.4e-52 211.5 465 36.6
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.8e-52 211.1 492 34.3
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.3e-52 210.7 452 36.3
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 3.1e-52 210.3 330 43.0
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 3.1e-52 210.3 410 38.5
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 4.0e-52 209.9 473 35.9
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 5.2e-52 209.5 420 36.0
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 5.2e-52 209.5 477 36.3
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.2e-51 208.4 489 35.4
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 2.0e-51 207.6 464 37.1
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 5.8e-51 206.1 473 35.7
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.3e-50 204.9 407 37.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.9e-50 203.8 476 36.1
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 3.7e-50 203.4 467 36.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 3.7e-50 203.4 473 34.7
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 6.4e-50 202.6 474 33.8
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.1e-49 201.8 492 34.6
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.1e-49 201.8 483 34.8
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.4e-49 200.7 421 37.1
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 4.1e-49 199.9 487 35.7
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 5.4e-49 199.5 486 35.8
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 7.1e-49 199.1 488 36.3
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.1e-48 197.6 370 39.7
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.6e-47 192.6 487 35.3
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 7.3e-46 189.1 484 34.1
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.6e-45 186.8 495 33.5
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 2.6e-43 180.6 477 34.6
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 5.8e-43 179.5 444 32.9
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.1e-40 171.0 456 34.4
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 7.8e-40 169.1 471 33.1
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.0e-39 168.7 490 33.5
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 5.1e-39 166.4 406 34.7
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 5.1e-39 166.4 406 35.0
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 3.3e-38 163.7 406 34.5
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.3e-38 162.5 502 32.5
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 9.6e-38 162.2 459 34.0
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.9e-36 155.6 457 33.0
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.8e-35 152.9 459 32.2
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 4.9e-34 149.8 415 33.3
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.1e-32 144.4 460 33.5
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 3.9e-31 140.2 343 35.0
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 3.9e-31 140.2 384 31.8
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.1e-30 138.7 129 58.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.1e-29 134.4 456 30.0
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.2e-27 128.6 295 35.3
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 2.9e-26 124.0 480 29.4
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.9e-25 121.3 321 35.5
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.9e-25 121.3 201 44.8
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.2e-25 120.6 419 31.3
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 7.1e-25 119.4 320 35.0
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 4.6e-24 116.7 238 40.8
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.6e-24 116.7 136 49.3
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 6.0e-24 116.3 435 30.3
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.9e-22 111.3 323 32.5
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 4.3e-22 110.2 328 30.8
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.6e-22 109.8 332 33.7
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.2e-19 102.1 427 30.2
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.5e-19 101.7 162 42.0
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.3e-18 98.6 58 86.2
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 2.9e-18 97.4 131 42.0
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.9e-17 94.7 144 45.1
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.7e-16 90.9 96 47.9
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.3e-15 87.8 293 31.1
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 3.0e-15 87.4 141 45.4
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 8.7e-15 85.9 389 27.5
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.5e-14 85.1 103 45.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 7.4e-14 82.8 237 32.9
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 9.6e-14 82.4 462 24.7
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.6e-13 81.6 196 35.2
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-13 81.3 164 34.1
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.7e-13 80.5 109 45.0
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 6.2e-13 79.7 478 25.7
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 8.1e-13 79.3 207 26.6
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.4e-12 77.8 59 61.0
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 6.9e-12 76.3 208 32.2
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.2e-10 71.2 140 37.1
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.9e-09 68.2 103 38.8
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.5e-09 67.8 404 26.0
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.3e-09 65.9 300 27.0
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.6e-08 65.1 46 63.0
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 3.9e-07 60.5 166 34.3
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 8.7e-07 59.3 95 38.9


User provided reference genes

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