Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.8e-271 938.7 499 100.0
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 5.9e-222 774.2 511 84.1
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.0e-218 763.5 507 81.1
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.1e-212 743.4 503 79.3
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 4.2e-212 741.5 500 81.2
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 2.5e-196 689.1 508 76.4
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.2e-185 653.7 511 74.4
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.7e-184 649.8 515 75.9
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.4e-183 646.7 511 75.5
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 2.7e-182 642.5 510 75.3
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.9e-180 636.3 512 74.8
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.8e-179 632.5 515 74.0
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.8e-179 632.5 515 74.0
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 6.0e-166 588.2 522 65.9
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.6e-134 483.8 534 52.8
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.3e-131 474.2 535 52.5
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 4.1e-130 469.2 540 54.4
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 9.0e-130 468.0 544 54.2
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.0e-129 466.8 535 52.3
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.0e-128 464.5 551 50.5
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 3.8e-128 462.6 544 51.3
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.9e-127 460.3 547 53.6
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.5e-127 458.8 533 52.2
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 7.2e-127 458.4 535 53.3
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 9.4e-127 458.0 545 53.6
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.7e-126 456.4 539 53.2
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 2.7e-126 456.4 539 53.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 7.9e-126 454.9 540 51.1
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.4e-125 454.1 539 52.9
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.3e-124 449.5 542 52.6
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 5.7e-124 448.7 526 52.5
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 2.2e-123 446.8 542 52.8
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 1.4e-122 444.1 555 50.3
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 6.9e-122 441.8 519 53.4
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.6e-121 439.9 543 53.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 5.0e-120 435.6 530 52.6
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 6.5e-120 435.3 526 53.4
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.4e-119 434.1 516 50.2
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 4.2e-119 432.6 553 51.5
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 4.2e-119 432.6 544 51.8
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.5e-119 432.2 541 51.8
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 2.1e-118 430.3 510 54.1
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.1e-118 430.3 554 48.0
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 7.9e-118 428.3 546 52.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.8e-117 427.2 530 52.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 6.7e-117 425.2 528 51.7
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.6e-116 423.3 528 54.0
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 2.6e-116 423.3 519 52.0
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.8e-115 419.9 542 47.8
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.8e-115 419.9 533 51.4
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 3.7e-115 419.5 531 49.7
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 8.2e-115 418.3 525 52.4
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 3.1e-114 416.4 546 50.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.7e-112 410.6 532 50.6
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 2.9e-112 409.8 545 50.5
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 3.8e-112 409.5 519 50.3
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.5e-111 406.8 555 48.1
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 3.2e-111 406.4 530 50.0
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 9.4e-111 404.8 518 49.0
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.6e-110 404.1 543 50.1
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 2.7e-110 403.3 595 46.7
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 2.7e-110 403.3 538 48.5
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 2.7e-110 403.3 539 49.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 6.1e-110 402.1 511 50.3
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 8.0e-110 401.7 544 48.9
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.0e-109 401.4 513 51.7
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.8e-109 400.6 560 48.6
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 2.3e-109 400.2 565 45.3
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 2.3e-109 400.2 533 47.3
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 2.3e-109 400.2 533 47.3
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 4.0e-109 399.4 530 51.7
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 5.2e-109 399.1 533 47.8
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.1e-108 397.9 513 51.5
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.5e-108 397.5 525 50.5
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.1e-106 389.8 514 49.6
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 4.1e-106 389.4 540 50.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 5.3e-106 389.0 538 49.4
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.0e-105 387.1 614 45.0
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 5.0e-104 382.5 537 49.0
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 5.0e-104 382.5 509 48.7
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 2.5e-103 380.2 542 46.1
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.2e-103 379.4 555 44.3
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.2e-102 377.9 540 47.6
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.6e-102 377.5 529 48.2
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.7e-102 375.9 518 49.6
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.0e-101 374.8 516 49.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.0e-101 374.8 532 47.9
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.8e-101 374.0 504 49.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.3e-101 373.6 534 47.0
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 2.3e-101 373.6 518 44.6
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.5e-100 370.9 535 48.8
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.5e-100 370.9 544 45.6
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 3.4e-100 369.8 522 48.7
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 4.4e-100 369.4 538 48.3
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 9.8e-100 368.2 530 47.5
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.8e-98 364.0 543 44.2
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.1e-98 363.2 526 47.9
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.0e-98 362.1 532 47.0
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 2.9e-96 356.7 534 48.3
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 8.5e-96 355.1 494 46.0
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.9e-95 354.0 527 47.4
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.0e-92 344.0 448 48.7
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 7.0e-90 335.5 478 46.4
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.2e-89 334.7 447 47.4
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 7.7e-89 332.0 413 49.2
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 8.6e-88 328.6 566 41.0
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 6.8e-85 318.9 497 43.5
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.6e-84 317.0 520 42.1
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 5.4e-82 309.3 546 42.3
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 3.7e-75 286.6 659 34.0
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.7e-75 286.6 577 38.1
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 6.0e-73 279.3 498 41.8
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.7e-72 277.7 497 42.1
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.7e-72 277.7 497 42.1
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.4e-69 268.1 500 41.8
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 2.0e-68 264.2 291 52.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 5.8e-68 262.7 294 52.0
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 6.6e-64 249.2 416 42.8
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.6e-60 237.3 584 36.1
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 9.9e-60 235.3 311 47.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 5.6e-55 219.5 396 42.9
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.8e-52 209.5 385 44.2
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.8e-51 206.8 598 33.8
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 6.4e-43 179.5 414 35.7
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 3.0e-40 170.6 252 51.6
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 2.5e-39 167.5 232 44.8
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.1e-38 164.5 176 54.0
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-36 158.7 280 40.0
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.6e-36 157.5 155 60.0
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-33 148.7 242 45.9
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.7e-33 147.5 507 31.2
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.5e-31 141.7 533 29.3
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.4e-31 139.4 200 48.5
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 2.1e-30 137.9 716 26.5
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.2e-27 127.9 117 65.0
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.9e-27 127.5 174 46.0
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 8.4e-27 125.9 435 29.0
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.3e-23 113.6 225 39.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 9.3e-18 95.9 89 57.3
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 2.5e-15 87.8 186 34.4
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 5.7e-15 86.7 66 65.2
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.3e-13 80.1 468 26.5
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.9e-13 79.7 88 47.7
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.0e-11 75.9 119 41.2
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.0e-11 75.9 122 41.8
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.5e-10 71.2 147 44.2
A09p43120 Brassica napus HOM05D000091 ORTHO05D004312 7.2e-10 69.7 47 72.3
BraA09t39782Z Brassica rapa HOM05D000091 ORTHO05D004312 7.2e-10 69.7 47 72.3
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 4.6e-09 67.0 372 26.6
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.1e-08 63.5 229 31.4
BcaC07g39466 Brassica carinata HOM05D004539 ORTHO05D005482 8.8e-08 62.8 44 70.5


User provided reference genes

Program Settings