Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 7.3e-301 1036.6 573 100.0
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 2.2e-233 812.4 572 80.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 2.7e-226 788.9 575 77.6
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 7.7e-226 787.3 575 77.6
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 8.6e-225 783.9 573 73.5
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 5.5e-224 781.2 575 76.9
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.0e-221 772.7 572 75.2
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.8e-219 766.1 573 72.4
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 9.5e-216 753.8 575 74.4
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.2e-215 753.4 575 74.6
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 8.9e-214 747.3 573 75.2
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 6.4e-212 741.1 572 71.3
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.3e-209 732.6 572 68.4
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-208 729.6 572 73.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.4e-206 723.4 575 68.0
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 3.4e-205 718.8 571 69.5
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 4.9e-204 714.9 564 69.9
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.4e-187 660.2 558 61.8
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 2.3e-185 652.9 564 65.8
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.7e-140 503.8 577 48.5
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 4.7e-138 495.7 539 50.3
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.1e-134 483.0 541 48.1
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 2.0e-133 480.3 571 46.8
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 2.6e-133 479.9 536 48.1
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.4e-131 474.2 544 47.6
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.5e-131 472.2 573 48.2
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 2.1e-130 470.3 577 45.9
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 8.0e-130 468.4 551 48.5
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.4e-129 467.6 539 48.4
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.1e-126 456.4 539 48.2
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.5e-125 453.0 536 45.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.3e-124 451.1 588 44.7
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.9e-123 447.2 546 46.5
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 7.2e-123 445.3 577 44.2
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 4.7e-122 442.6 550 45.1
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.4e-121 441.0 539 46.8
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 5.7e-120 435.6 515 48.0
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.7e-120 435.6 542 44.5
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.7e-120 435.6 542 44.5
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 8.2e-119 431.8 542 45.9
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 7.7e-117 425.2 577 42.8
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.2e-116 423.7 541 44.5
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 2.2e-116 423.7 617 41.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 6.5e-116 422.2 562 43.6
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.1e-114 417.2 574 43.0
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 2.1e-114 417.2 597 42.0
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 3.6e-114 416.4 538 45.7
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.3e-113 413.7 571 42.6
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.0e-113 412.9 558 42.8
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 6.8e-113 412.1 543 43.1
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 6.8e-113 412.1 550 44.4
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 8.8e-113 411.8 536 44.6
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.5e-112 411.0 539 44.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.5e-112 411.0 558 43.0
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 2.0e-112 410.6 569 42.4
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.6e-112 410.2 539 44.3
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.4e-112 409.8 558 42.3
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.4e-112 409.5 581 43.7
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.7e-112 409.1 558 42.7
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 5.7e-112 409.1 542 43.7
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.7e-111 407.5 543 44.4
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.2e-111 407.1 541 42.9
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 6.3e-111 405.6 550 43.5
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 3.1e-110 403.3 536 41.8
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 4.1e-110 402.9 533 41.8
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.4e-110 402.5 571 43.3
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 7.0e-110 402.1 543 42.9
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 3.5e-109 399.8 555 40.4
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-108 397.9 550 41.1
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.3e-108 397.9 583 40.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.9e-108 396.7 554 41.7
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.1e-107 394.8 576 41.8
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.1e-107 394.8 538 41.8
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 2.5e-107 393.7 558 40.9
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 7.2e-107 392.1 552 40.2
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 9.5e-107 391.7 572 40.7
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.2e-106 391.3 571 41.3
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.2e-106 391.3 538 40.5
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 2.1e-106 390.6 540 40.0
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.5e-104 384.4 557 41.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.0e-104 384.0 540 39.3
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 5.7e-104 382.5 523 41.3
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.3e-103 381.3 542 39.5
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 2.2e-103 380.6 467 47.3
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.7e-103 379.8 575 40.0
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 9.2e-102 375.2 548 40.7
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.2e-101 374.8 545 39.1
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.2e-101 374.8 537 43.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 2.7e-101 373.6 548 40.3
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.7e-101 373.6 536 43.8
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 5.9e-101 372.5 575 40.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 5.9e-101 372.5 536 44.6
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 3.8e-100 369.8 460 45.4
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 5.0e-100 369.4 545 37.6
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 5.6e-99 365.9 544 40.1
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.0e-97 361.7 581 38.7
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.0e-97 360.1 550 38.4
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.4e-96 356.7 467 45.6
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 4.9e-95 352.8 546 39.7
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 9.2e-94 348.6 586 38.1
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.0e-92 345.1 547 38.2
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.3e-92 344.0 534 39.7
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 5.0e-92 342.8 553 37.8
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 2.1e-90 337.4 501 39.7
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.4e-89 334.7 536 38.2
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.4e-89 334.7 536 38.4
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 6.8e-89 332.4 535 37.8
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 2.0e-88 330.9 590 36.6
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.6e-88 330.5 552 37.5
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 2.9e-87 327.0 544 37.5
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.9e-87 327.0 536 37.5
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 4.9e-87 326.2 538 38.1
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 9.2e-86 322.0 550 38.7
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.3e-84 318.2 389 46.5
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.3e-84 318.2 440 41.4
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 7.3e-83 312.4 376 48.4
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 8.9e-81 305.4 426 42.7
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 8.9e-81 305.4 540 35.0
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 4.4e-80 303.1 434 41.7
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 7.5e-80 302.4 463 41.0
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.1e-78 298.5 545 35.0
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.4e-78 298.1 447 39.8
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.8e-74 283.9 365 44.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.2e-62 243.4 538 30.5
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.6e-61 241.5 426 37.3
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 4.6e-61 240.0 164 76.2
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 5.6e-59 233.0 396 34.8
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.4e-57 227.6 266 46.2
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 9.9e-56 222.2 544 31.4
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.6e-51 206.5 253 44.7
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.6e-45 188.3 254 46.1
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 6.0e-45 186.4 315 34.0
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.9e-45 186.0 329 36.8
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 7.9e-45 186.0 361 33.2
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.0e-40 171.4 231 42.4
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.2e-38 164.1 248 36.7
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.8e-36 158.3 479 28.0
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 9.0e-33 146.0 449 26.5
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.4e-30 138.7 457 26.7
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.9e-30 138.3 249 31.7
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.7e-24 116.3 145 44.1
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.7e-24 116.3 164 42.1
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 2.2e-23 114.8 479 24.2
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 5.0e-23 113.6 413 23.0
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.0e-23 113.6 181 39.8
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.6e-21 107.5 131 44.3
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 3.6e-21 107.5 152 36.8
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 3.6e-21 107.5 554 22.4
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.5e-19 102.1 155 37.4
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.0e-19 101.7 95 60.0
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.0e-19 101.7 155 36.8
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 1.8e-17 95.1 162 48.8
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 2.4e-17 94.7 230 30.4
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.4e-17 94.7 182 34.6
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.0e-16 91.7 123 43.9
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.6e-16 91.3 315 30.2
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-15 87.4 176 31.2
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 6.5e-15 86.7 74 58.1
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 2.5e-14 84.7 133 36.1
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 9.4e-14 82.8 163 33.7
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.6e-13 80.9 118 38.1
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.0e-12 79.3 124 34.7
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.3e-12 78.2 122 42.6
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 6.7e-12 76.6 130 33.1
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.3e-11 74.3 117 36.8
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 3.3e-11 74.3 170 28.8
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-09 69.3 105 34.3
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.5e-08 64.3 115 39.1
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.0e-07 62.8 60 50.0
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.2e-06 57.8 54 48.1
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 7.2e-06 56.6 69 40.6
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 7.2e-06 56.6 84 31.0


User provided reference genes

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