Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 0.0e+00 1245.7 634 100.0
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 0.0e+00 1172.1 634 92.6
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 0.0e+00 1163.7 634 92.1
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 0.0e+00 1157.5 634 91.6
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 0.0e+00 1139.0 634 90.1
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 0.0e+00 1137.5 638 89.8
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 0.0e+00 1137.1 639 89.8
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 0.0e+00 1134.0 634 89.3
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 0.0e+00 1132.9 638 89.8
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 0.0e+00 1112.4 689 83.0
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 0.0e+00 1100.5 708 80.8
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 0.0e+00 1099.3 661 83.7
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 6.2e-285 983.8 667 73.5
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 5.5e-257 891.0 494 90.9
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 2.2e-245 852.4 634 64.5
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 2.8e-245 852.0 634 65.5
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 3.7e-245 851.7 634 65.5
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 9.1e-244 847.0 634 64.8
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.0e-242 843.6 634 64.8
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 2.9e-242 842.0 634 65.0
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 5.0e-242 841.3 633 65.1
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.9e-241 839.3 634 65.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.2e-240 836.6 634 63.7
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.6e-240 836.3 634 62.8
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 2.7e-240 835.5 634 65.1
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 2.7e-240 835.5 634 63.6
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.3e-239 832.4 634 64.7
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.0e-239 832.0 633 64.8
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 3.0e-239 832.0 634 64.2
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 6.7e-239 830.9 634 63.7
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 5.7e-238 827.8 636 63.2
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.3e-237 826.6 634 64.0
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 1.3e-237 826.6 638 63.6
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.2e-237 825.9 634 63.6
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 2.8e-237 825.5 634 62.5
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 3.7e-237 825.1 634 62.9
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 3.7e-237 825.1 634 63.7
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 3.7e-237 825.1 634 63.6
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 8.2e-237 823.9 665 61.7
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 8.2e-237 823.9 634 63.6
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 1.4e-236 823.2 640 63.1
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 1.4e-236 823.2 651 62.2
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 5.3e-236 821.2 634 63.1
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 7.0e-236 820.8 634 63.6
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 2.0e-235 819.3 638 63.9
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 2.7e-235 818.9 634 62.3
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 4.5e-235 818.1 634 63.2
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 7.7e-235 817.4 634 62.1
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.7e-234 816.2 634 63.4
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 2.2e-234 815.8 634 63.6
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 1.5e-233 813.1 635 62.2
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.5e-233 813.1 634 63.1
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 3.2e-233 812.0 634 63.1
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 5.5e-233 811.2 634 62.8
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 7.2e-233 810.8 634 62.3
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 9.4e-233 810.4 634 62.9
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 1.2e-232 810.1 635 62.5
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 3.4e-230 802.0 634 62.5
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 1.7e-229 799.7 681 58.9
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.2e-227 793.5 635 61.9
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 2.9e-226 788.9 635 61.6
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 6.6e-226 787.7 665 59.7
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 8.6e-226 787.3 634 59.9
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 3.3e-225 785.4 718 56.7
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 7.2e-225 784.3 634 61.8
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 4.7e-224 781.6 634 60.4
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 6.1e-224 781.2 636 61.0
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 4.0e-223 778.5 626 62.5
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.2e-221 772.7 581 65.2
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 3.7e-221 771.9 634 60.1
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 4.9e-221 771.5 634 59.5
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 2.7e-219 765.8 634 59.1
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 2.9e-218 762.3 634 59.5
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 3.3e-217 758.8 708 54.8
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.5e-217 757.3 580 63.8
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 5.2e-215 751.5 634 58.2
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 4.4e-214 748.4 687 56.9
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.8e-214 747.3 634 59.9
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 2.9e-213 745.7 616 60.1
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 7.8e-211 737.6 545 67.9
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.2e-208 730.3 634 58.0
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 2.8e-208 729.2 636 57.7
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 8.0e-208 727.6 614 60.4
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 3.1e-207 725.7 639 57.4
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 2.6e-206 722.6 573 61.6
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.7e-202 709.9 634 55.8
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 5.1e-202 708.4 546 64.3
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 3.3e-201 705.7 666 55.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 8.1e-200 701.0 665 54.0
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 2.1e-195 686.4 635 54.5
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 3.5e-195 685.6 673 53.8
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 2.3e-194 682.9 636 55.2
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.5e-193 679.5 635 53.2
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.6e-192 676.8 515 65.4
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.7e-192 675.2 634 54.3
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.8e-184 649.4 634 53.8
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 9.9e-182 641.0 617 53.0
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 2.1e-171 606.7 640 51.7
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.0e-165 587.8 595 51.6
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 5.5e-156 555.4 655 45.5
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 2.0e-150 537.0 640 44.4
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.0e-130 469.9 353 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 8.8e-130 468.4 673 40.7
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 2.0e-118 430.6 552 45.7
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 8.8e-114 415.2 317 65.0
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 1.7e-85 321.2 388 48.2
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 1.9e-84 317.8 301 53.2
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 9.5e-84 315.5 356 49.7
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 9.3e-71 272.3 237 58.6
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.6e-67 261.5 646 30.2
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 4.0e-66 256.9 143 86.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.9e-56 224.2 319 42.3
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 6.0e-46 189.9 323 33.4
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 1.1e-34 152.5 719 25.3
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.5e-33 148.7 115 62.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 7.7e-33 146.4 298 32.2
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 2.6e-25 121.3 116 57.8
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 3.0e-21 107.8 99 54.5
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 6.7e-21 106.7 138 42.8
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 8.8e-21 106.3 62 85.5
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 8.8e-21 106.3 62 85.5
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 8.5e-16 89.7 62 62.9
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.3e-13 81.6 63 61.9
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.7e-11 75.5 80 45.0
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 4.8e-11 73.9 103 39.8
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 4.8e-11 73.9 84 50.0
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 7.0e-10 70.1 38 76.3
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 2.7e-09 68.2 46 63.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.7e-09 68.2 46 63.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 7.7e-09 66.6 46 60.9
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 5.0e-08 63.9 42 64.3
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.0e-08 63.9 46 60.9
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.1e-07 62.8 42 61.9


User provided reference genes

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