Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 0.0e+00 1735.3 872 100.0
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 0.0e+00 1484.9 894 85.0
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 0.0e+00 1431.4 894 82.3
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 0.0e+00 1431.4 894 82.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 0.0e+00 1417.9 896 81.7
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 0.0e+00 1417.9 896 81.6
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 0.0e+00 1415.6 896 81.7
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 0.0e+00 1406.7 896 81.0
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 0.0e+00 1363.2 894 79.3
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 0.0e+00 1243.0 887 72.9
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 0.0e+00 1102.4 905 64.5
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 1.9e-244 849.7 543 81.0
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 7.4e-228 794.7 918 47.3
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 2.5e-223 779.6 910 48.1
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 2.5e-223 779.6 931 47.3
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 3.0e-221 772.7 913 47.5
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.7e-216 756.9 930 45.4
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 3.2e-215 752.7 897 47.0
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 4.2e-215 752.3 923 46.4
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.8e-213 746.9 930 45.1
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 2.3e-213 746.5 915 45.4
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.9e-212 743.4 895 47.4
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.4e-210 737.3 905 46.7
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 2.4e-210 736.5 922 44.9
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 3.8e-208 729.2 906 45.8
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.1e-207 727.6 895 46.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.9e-207 726.9 906 45.8
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 9.4e-207 724.5 908 44.7
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 2.3e-205 719.9 917 44.9
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.7e-204 715.3 904 45.6
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 2.8e-203 713.0 846 47.6
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 2.8e-203 713.0 825 48.2
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 2.4e-202 709.9 896 46.0
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 6.9e-202 708.4 1117 40.3
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 7.7e-201 704.9 922 43.8
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 6.1e-198 695.3 884 45.5
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 8.2e-195 684.9 1113 38.4
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 2.9e-192 676.4 899 42.4
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 3.8e-192 676.0 900 43.2
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 5.0e-192 675.6 893 43.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 3.2e-191 672.9 898 43.0
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 7.2e-191 671.8 1105 39.0
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 3.6e-190 669.5 901 42.7
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 8.0e-190 668.3 916 43.0
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.8e-189 667.2 882 43.4
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 8.8e-189 664.8 896 42.1
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.5e-188 664.1 866 45.8
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 3.3e-188 662.9 897 43.4
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 7.0e-186 655.2 893 42.3
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 9.1e-186 654.8 904 41.6
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 1.2e-185 654.4 895 42.9
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 2.9e-184 649.8 1120 37.4
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 7.2e-183 645.2 910 42.9
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 1.0e-181 641.3 903 41.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-181 640.2 913 41.3
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 8.8e-181 638.3 910 42.5
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 1.2e-180 637.9 897 41.8
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 6.3e-179 632.1 913 40.9
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 9.1e-178 628.2 916 41.5
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 2.0e-177 627.1 903 39.5
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 2.0e-177 627.1 1126 36.0
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 1.3e-176 624.4 931 40.0
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 3.8e-176 622.9 894 41.3
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.5e-172 610.9 917 40.3
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 4.9e-171 605.9 1104 35.4
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 6.1e-166 589.0 851 40.8
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.4e-165 587.8 803 41.8
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.3e-165 587.0 652 48.6
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 6.8e-165 585.5 915 39.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.6e-164 583.6 800 41.6
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 1.3e-163 581.3 904 39.0
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 1.8e-162 577.4 1088 35.4
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 2.0e-161 573.9 893 39.9
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.5e-161 573.2 905 39.4
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.0e-157 559.7 906 38.7
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 2.2e-155 553.9 849 39.3
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 3.2e-154 550.1 900 39.3
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 9.2e-154 548.5 896 39.0
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 3.5e-153 546.6 639 47.4
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.9e-152 543.1 876 39.0
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.1e-151 541.6 925 37.8
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 2.5e-151 540.4 1045 34.5
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 1.1e-149 535.0 699 44.6
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.2e-148 531.6 808 39.7
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 7.5e-148 528.9 920 36.6
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 4.6e-145 519.6 1064 34.5
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 3.0e-144 516.9 970 34.7
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.4e-140 503.4 1130 31.0
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 3.8e-139 500.0 301 84.7
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.6e-137 493.0 863 37.8
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.9e-130 471.1 658 41.5
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.0e-128 463.8 1030 32.2
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 8.7e-128 462.2 752 39.6
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 8.4e-123 445.7 522 47.7
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 1.8e-120 438.0 883 34.1
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.1e-117 428.7 956 32.9
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 3.2e-114 417.2 519 46.1
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 7.9e-113 412.5 959 32.8
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 5.1e-112 409.8 583 41.2
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 3.3e-103 380.6 950 30.8
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 5.3e-101 373.2 598 38.3
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 4.2e-98 363.6 553 40.1
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 9.4e-98 362.5 604 38.2
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 5.9e-92 343.2 952 29.8
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.9e-90 338.2 446 43.0
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 2.1e-89 334.7 502 40.8
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.4e-85 322.0 723 33.3
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.8e-85 321.6 393 48.3
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.0e-80 305.8 726 32.9
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.1e-69 269.2 211 69.7
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 3.1e-69 267.7 375 40.8
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 2.2e-67 261.5 659 30.5
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 1.8e-64 251.9 474 36.9
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 2.8e-62 244.6 377 38.5
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 9.8e-55 219.5 931 25.2
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 4.5e-52 210.7 379 35.6
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.1e-49 201.8 234 46.2
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.6e-49 201.1 642 27.4
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.9e-43 181.0 219 43.4
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 7.3e-42 176.8 276 38.8
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 5.2e-40 170.6 209 46.4
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 3.2e-37 161.4 181 48.6
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 5.4e-37 160.6 158 52.5
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.7e-35 155.6 761 25.4
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 5.2e-32 144.1 335 29.0
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.2e-30 138.7 199 40.2
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 7.1e-29 133.7 109 66.1
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.0e-27 129.8 190 40.0
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.9e-21 109.0 84 54.8
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.5e-18 98.6 116 44.0
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 4.3e-18 97.8 213 28.6
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 1.6e-17 95.9 209 33.5
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 2.1e-17 95.5 85 58.8
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 7.6e-15 87.0 139 39.6
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 1.7e-06 59.3 103 33.0
Lsat_1_v5_gn_5_180141 Lactuca sativa HOM05D006183 ORTHO05D007844 2.2e-06 58.9 188 27.7
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 4.9e-06 57.8 163 28.8
FAN15G0492 Fragaria x ananassa HOM05D006183 ORTHO05D007844 6.4e-06 57.4 158 29.7
FAN24G0209 Fragaria x ananassa HOM05D006183 ORTHO05D007844 6.4e-06 57.4 158 29.7


User provided reference genes

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