Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 0.0e+00 1967.2 992 100.0
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 0.0e+00 1635.5 1023 83.8
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 0.0e+00 1538.1 1029 79.4
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 0.0e+00 1514.6 1032 79.0
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1491.1 993 79.5
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 0.0e+00 1468.0 1032 76.9
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 0.0e+00 1431.0 1007 76.3
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1421.8 1007 76.4
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 0.0e+00 1382.9 999 75.2
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 0.0e+00 1380.5 1003 75.0
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 0.0e+00 1323.9 997 72.5
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 0.0e+00 1317.8 1015 70.0
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 9.4e-304 1047.0 992 60.8
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 1.9e-235 820.1 1080 46.0
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 8.1e-231 804.7 1027 46.6
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.2e-229 800.8 1069 46.1
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 4.4e-229 798.9 663 68.9
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 9.9e-229 797.7 1045 47.4
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.3e-228 797.3 1078 46.9
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 2.7e-226 789.6 1067 46.1
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 4.6e-226 788.9 1043 47.9
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 1.8e-222 776.9 1103 44.3
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 4.0e-222 775.8 1064 47.3
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 5.3e-222 775.4 1112 43.5
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.5e-221 773.9 1064 46.9
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 2.6e-221 773.1 1078 44.8
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 3.4e-221 772.7 1134 43.7
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 4.9e-220 768.8 1116 44.3
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 2.4e-219 766.5 1130 43.0
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.2e-219 766.1 1117 44.0
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 1.6e-218 763.8 1080 45.4
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 1.8e-217 760.4 1119 43.4
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 3.9e-217 759.2 1143 43.3
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 1.9e-216 756.9 1131 43.1
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 1.9e-216 756.9 1181 42.6
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.3e-215 754.2 1147 43.2
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 2.8e-215 753.1 1201 42.5
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 8.1e-215 751.5 1142 42.6
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 5.3e-214 748.8 1115 43.5
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 6.5e-212 741.9 1070 44.2
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 8.4e-212 741.5 1141 42.6
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 1.4e-211 740.7 1160 41.8
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 3.2e-211 739.6 1109 42.4
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 2.1e-210 736.9 1110 41.9
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 4.6e-210 735.7 1106 42.5
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.8e-209 733.8 1152 41.5
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.0e-209 733.0 1211 40.9
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 5.1e-209 732.3 911 46.9
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 3.3e-208 729.6 1009 44.7
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 7.4e-208 728.4 1027 44.5
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 1.6e-207 727.2 1106 42.6
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 2.8e-207 726.5 1009 45.1
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 6.2e-207 725.3 1076 43.1
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 3.1e-206 723.0 1056 45.4
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 6.9e-206 721.8 1026 43.3
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 9.0e-206 721.5 1024 43.5
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 2.0e-205 720.3 1027 44.1
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 8.4e-204 714.9 1085 42.8
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 1.2e-202 711.1 1041 42.5
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 1.0e-201 708.0 1035 42.9
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 1.8e-201 707.2 1002 42.6
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 3.0e-201 706.4 1087 43.3
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 1.1e-200 704.5 1072 42.3
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 1.5e-200 704.1 1100 41.8
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 9.7e-200 701.4 1033 43.0
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 2.2e-199 700.3 902 46.5
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 2.2e-199 700.3 1134 41.5
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 4.8e-199 699.1 1051 42.2
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 1.2e-197 694.5 1025 41.5
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 3.4e-197 693.0 1086 42.4
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 3.4e-197 693.0 1083 43.1
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 1.7e-196 690.6 1199 39.1
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 1.9e-195 687.2 1113 41.3
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 7.2e-195 685.3 1058 41.4
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 9.4e-195 684.9 1048 42.6
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 9.4e-195 684.9 1098 41.3
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 5.1e-193 679.1 1104 40.1
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.0e-192 677.2 595 59.0
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 3.3e-192 676.4 1066 40.2
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 7.4e-192 675.2 1071 41.1
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 5.3e-190 669.1 1160 39.1
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 3.4e-189 666.4 862 45.0
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 1.3e-188 664.5 883 45.4
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.9e-187 660.6 562 58.9
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 4.2e-187 659.4 966 42.4
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 1.6e-186 657.5 1107 41.7
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 1.5e-184 651.0 1112 39.6
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 1.5e-184 651.0 1000 42.4
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 1.5e-184 651.0 1051 40.9
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 2.0e-184 650.6 1121 39.8
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 1.7e-183 647.5 945 43.0
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 5.3e-182 642.5 999 41.7
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 4.5e-173 612.8 1054 39.3
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.6e-170 604.4 910 44.3
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 9.1e-166 588.6 1113 37.1
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 2.9e-164 583.6 861 41.7
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 2.3e-161 573.9 1007 38.5
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 1.2e-160 571.6 1033 38.1
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 6.6e-156 555.8 565 52.4
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 6.8e-153 545.8 686 46.4
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.5e-149 533.5 1110 37.7
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 4.7e-130 469.9 865 39.3
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 3.0e-124 450.7 516 49.2
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 5.2e-121 439.9 746 36.5
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.7e-119 434.9 382 58.9
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 2.1e-117 427.9 802 37.7
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.7e-116 424.9 1112 32.2
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 2.1e-114 417.9 315 65.7
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 2.1e-114 417.9 553 43.2
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 1.6e-109 401.7 501 42.5
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 5.6e-107 393.3 528 44.5
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 2.9e-103 380.9 437 48.3
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.8e-103 380.6 844 36.1
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 1.1e-102 379.0 557 41.5
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 4.0e-97 360.5 713 40.0
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 2.0e-67 261.9 675 32.3
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 3.6e-61 241.1 230 57.0
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 8.0e-61 240.0 222 54.1
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 1.8e-28 132.5 271 32.5
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 9.8e-19 100.1 236 32.2
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.7e-16 92.0 80 56.2
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 4.6e-16 91.3 105 49.5
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 2.3e-15 89.0 58 63.8
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 3.0e-15 88.6 75 54.7
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 3.9e-15 88.2 49 77.6
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.5e-14 86.3 375 29.6
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 5.6e-14 84.3 57 68.4
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 7.3e-14 84.0 49 73.5
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.6e-13 82.8 160 39.4
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 1.6e-13 82.8 327 26.3
C03p37040 Brassica napus HOM05D000922 ORTHO05D007418 3.6e-13 81.6 109 47.7
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 4.0e-12 78.2 90 54.4
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.1e-08 65.9 93 49.5
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 3.0e-07 62.0 34 73.5


User provided reference genes

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