Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.0e-135 484.6 266 100.0
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.5e-110 402.5 266 81.2
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 3.0e-108 395.6 268 84.7
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 6.8e-108 394.4 268 82.5
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.0e-107 392.9 265 77.0
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 4.4e-107 391.7 266 83.1
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 1.3e-106 390.2 268 81.7
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 1.7e-106 389.8 267 82.0
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 2.2e-106 389.4 268 81.3
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 3.7e-106 388.7 267 82.0
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.1e-105 385.2 265 83.0
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.4e-84 317.0 253 69.2
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 3.4e-83 312.4 254 68.5
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 2.4e-81 306.2 256 67.2
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 5.4e-81 305.1 263 66.5
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 1.7e-79 300.1 257 66.5
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 3.9e-79 298.9 253 66.8
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 5.1e-79 298.5 254 67.3
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 1.1e-78 297.4 256 66.0
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 3.3e-78 295.8 256 66.0
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.3e-78 295.8 265 65.3
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 5.6e-78 295.0 253 65.2
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 4.7e-77 292.0 259 66.8
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 6.2e-77 291.6 265 57.7
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 3.1e-76 289.3 256 64.5
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 3.1e-76 289.3 256 64.5
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 5.2e-76 288.5 252 65.9
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 2.9e-74 282.7 252 63.1
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.4e-73 280.4 254 63.4
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 5.6e-70 268.5 255 63.9
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 5.2e-68 261.9 252 56.3
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 5.7e-38 162.2 258 43.0
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 5.7e-38 162.2 258 43.0
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 1.4e-36 157.5 258 42.6
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 1.4e-36 157.5 258 42.6
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 1.4e-36 157.5 258 42.6
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.4e-36 156.8 251 37.1
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 4.1e-36 156.0 249 42.6
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 4.1e-36 156.0 249 42.6
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.0e-35 153.7 252 38.9
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 1.7e-34 150.6 252 43.7
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.2e-34 150.2 251 36.3
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.9e-34 149.8 251 42.6
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.8e-34 149.4 251 41.8
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 6.5e-34 148.7 251 42.6
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 4.2e-33 146.0 251 41.4
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 4.2e-33 146.0 253 43.1
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 5.5e-33 145.6 251 40.2
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.2e-32 144.4 250 36.0
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 3.6e-32 142.9 242 34.7
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.6e-32 142.9 248 42.3
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 6.1e-32 142.1 254 36.6
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 1.4e-31 141.0 259 41.3
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 1.8e-31 140.6 248 40.7
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 1.8e-31 140.6 248 40.7
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 1.9e-30 137.1 250 44.0
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 1.9e-30 137.1 257 42.4
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 2.5e-30 136.7 249 41.0
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 2.5e-30 136.7 249 41.0
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 5.7e-30 135.6 251 34.7
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 9.7e-30 134.8 254 39.0
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 1.3e-29 134.4 251 40.2
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.7e-29 134.0 257 41.6
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 2.2e-29 133.7 254 36.6
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 3.7e-29 132.9 254 40.6
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.4e-28 131.0 170 40.6
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.4e-28 131.0 249 37.8
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 1.8e-28 130.6 256 37.1
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 1.8e-28 130.6 256 39.8
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.4e-28 130.2 256 37.1
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 3.1e-28 129.8 170 41.2
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 5.3e-28 129.0 247 34.8
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 6.9e-28 128.6 256 40.6
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 1.2e-27 127.9 257 39.3
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.5e-27 127.5 255 37.6
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 2.0e-27 127.1 265 41.9
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.6e-27 126.7 256 37.9
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 5.9e-27 125.6 255 36.5
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 2.9e-26 123.2 246 39.8
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.8e-26 122.9 251 31.5
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.8e-26 122.9 251 31.9
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 8.5e-26 121.7 250 38.0
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.9e-25 120.6 243 34.6
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 2.5e-25 120.2 247 34.0
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 4.2e-25 119.4 254 39.4
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.2e-25 119.4 246 36.2
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 9.4e-25 118.2 247 39.7
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.2e-24 117.9 254 36.2
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 4.7e-24 115.9 255 38.0
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 8.8e-23 111.7 138 44.2
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 1.1e-22 111.3 246 39.0
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 1.5e-22 110.9 245 34.3
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 1.5e-22 110.9 253 39.9
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 1.7e-21 107.5 256 36.3
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 1.1e-20 104.8 215 38.6
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 5.3e-20 102.4 249 39.0
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 9.1e-20 101.7 240 32.5
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 1.2e-19 101.3 251 34.3
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 2.0e-19 100.5 139 36.7
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.7e-18 97.4 244 37.7
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 1.7e-18 97.4 251 37.8
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 2.2e-18 97.1 265 34.3
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 6.5e-18 95.5 254 36.2
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 8.5e-18 95.1 246 35.8
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 1.9e-17 94.0 251 34.3
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 2.5e-17 93.6 249 32.9
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 1.6e-16 90.9 250 36.8
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 2.1e-16 90.5 246 36.6
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.7e-16 90.1 247 30.4
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 2.7e-16 90.1 171 33.9
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 1.8e-15 87.4 173 31.8
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 1.8e-15 87.4 251 27.1
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 3.0e-15 86.7 171 30.4
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.2e-15 85.9 149 34.9
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 2.6e-14 83.6 171 29.8
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 2.6e-14 83.6 247 34.0
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 3.3e-14 83.2 253 33.6
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 3.3e-14 83.2 244 33.2
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 5.7e-14 82.4 97 43.3
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 9.7e-14 81.6 249 33.7
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 1.3e-13 81.3 253 34.0
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.7e-13 80.9 254 32.7
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 6.3e-13 79.0 224 30.4
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 1.4e-12 77.8 246 33.3
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 4.1e-12 76.3 246 30.9
Thhalv10008522m.g Eutrema salsugineum HOM05D002137 ORTHO05D002144 5.3e-12 75.9 177 29.9
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.6e-11 73.6 247 33.6
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 3.8e-10 69.7 171 28.7
Sc23g0005630 Simmondsia chinensis HOM05D002137 ORTHO05D002144 3.8e-10 69.7 241 29.9
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 6.5e-10 68.9 206 37.4
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 8.5e-10 68.6 101 39.6
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 3.2e-09 66.6 169 33.1
CAN.G449.55 Capsicum annuum HOM05D002137 ORTHO05D002144 7.2e-09 65.5 251 25.1
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 7.2e-09 65.5 176 27.3
Aa31LG7G2430 Aethionema arabicum HOM05D002137 ORTHO05D002144 9.4e-09 65.1 154 29.2
Manes.04G139900 Manihot esculenta HOM05D002137 ORTHO05D002144 2.1e-08 63.9 183 26.8
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 6.1e-08 62.4 163 27.6
Lsat_1_v5_gn_3_24501 Lactuca sativa HOM05D002137 ORTHO05D002144 1.0e-07 61.6 213 25.4
Migut.A00132 Erythranthe guttata HOM05D002137 ORTHO05D002144 1.4e-07 61.2 237 29.5
Manes.11G026200 Manihot esculenta HOM05D002137 ORTHO05D002144 1.4e-07 61.2 256 33.2
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 3.0e-07 60.1 125 32.0
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 3.0e-07 60.1 134 30.6
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 4.0e-07 59.7 130 29.2
Gohir.D05G137400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 5.2e-07 59.3 183 26.8
Hma1.2p1_0544F.1_g175840 Hydrangea macrophylla HOM05D002137 ORTHO05D002144 8.8e-07 58.5 155 26.5
AL6G22650 Arabidopsis lyrata HOM05D002137 ORTHO05D002144 1.2e-06 58.2 152 28.9
Aa31LG3G15310 Aethionema arabicum HOM05D002137 ORTHO05D002144 2.0e-06 57.4 152 27.6
AT5G11890 Arabidopsis thaliana HOM05D002137 ORTHO05D002144 2.0e-06 57.4 152 29.6
ECA232G0334 Erigeron canadensis HOM05D002137 ORTHO05D002144 2.0e-06 57.4 153 28.8
HanXRQChr06g0173871 Helianthus annuus HOM05D002137 ORTHO05D002144 2.0e-06 57.4 153 28.8
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 2.6e-06 57.0 124 32.3
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 2.6e-06 57.0 124 32.3
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 2.6e-06 57.0 124 32.3
ATR0026G055 Amborella trichopoda HOM05D002137 ORTHO05D002144 3.3e-06 56.6 180 26.7
Gohir.D10G060200 Gossypium hirsutum HOM05D002137 ORTHO05D002144 3.3e-06 56.6 186 25.3
Gorai.011G064400 Gossypium raimondii HOM05D002137 ORTHO05D002144 3.3e-06 56.6 186 25.3
Duzib192G0186 Durio zibethinus HOM05D002137 ORTHO05D002144 4.4e-06 56.2 244 24.2
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 4.4e-06 56.2 224 26.8
Gohir.A05G135400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 4.4e-06 56.2 235 31.9
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 5.7e-06 55.8 124 32.3
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 5.7e-06 55.8 124 31.5
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 5.7e-06 55.8 124 31.5
Gohir.A10G058400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 5.7e-06 55.8 186 25.8
GSVIVG01016858001 Vitis vinifera HOM05D002137 ORTHO05D002144 5.7e-06 55.8 204 25.0


User provided reference genes

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