Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 7.8e-46 186.8 97 100.0
A08p30150 Brassica napus HOM05D011140 ORTHO05D013248 1.4e-34 149.4 98 80.6
BraA08t34949Z Brassica rapa HOM05D011140 ORTHO05D013248 1.4e-34 149.4 98 80.6
BcaB03g14477 Brassica carinata HOM05D011140 ORTHO05D013248 4.9e-32 141.0 99 76.8
BcaB03g12952 Brassica carinata HOM05D011140 ORTHO05D013248 1.4e-31 139.4 98 76.5
BcaC07g38953 Brassica carinata HOM05D011140 ORTHO05D013248 9.3e-31 136.7 98 74.5
C08p18990 Brassica napus HOM05D011140 ORTHO05D013248 9.3e-31 136.7 98 74.5
BolC8t49523H Brassica oleracea HOM05D011140 ORTHO05D013248 9.3e-31 136.7 98 74.5
CARHR019480 Cardamine hirsuta HOM05D011140 ORTHO05D013248 6.0e-30 134.0 97 76.3
Carub.0001s1848 Capsella rubella HOM05D011140 ORTHO05D013248 3.0e-29 131.7 100 76.0
BcaB07g31901 Brassica carinata HOM05D011140 ORTHO05D013248 1.6e-27 125.9 98 74.5
BcaC05g25785 Brassica carinata HOM05D011140 ORTHO05D013248 5.3e-26 120.9 98 72.4
C05p17250 Brassica napus HOM05D011140 ORTHO05D013248 5.3e-26 120.9 98 72.4
BolC5t30425H Brassica oleracea HOM05D011140 ORTHO05D013248 5.3e-26 120.9 98 72.4
BraA06t24620Z Brassica rapa HOM05D011140 ORTHO05D013248 5.3e-26 120.9 98 72.4
A06p15050 Brassica napus HOM05D011140 ORTHO05D013248 1.5e-25 119.4 98 71.4
BcaB07g32207 Brassica carinata HOM05D011140 ORTHO05D013248 7.1e-23 110.5 74 78.4
BcaC07g41288 Brassica carinata HOM05D011140 ORTHO05D013248 2.5e-15 85.5 68 64.7
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 3.3e-12 75.1 104 49.0
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 9.7e-12 73.6 101 46.5
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.3e-11 73.2 99 45.5
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 8.2e-11 70.5 97 44.3
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.0e-10 67.0 104 41.3
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.5e-09 66.2 104 40.4
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.6e-09 65.5 100 40.0
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 2.6e-09 65.5 94 48.9
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 4.5e-09 64.7 95 47.4
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 7.6e-09 63.9 95 45.3
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.3e-08 63.2 90 45.6
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 3.8e-08 61.6 97 42.3
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 6.5e-08 60.8 100 41.0
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 8.5e-08 60.5 92 42.4
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-07 60.1 100 42.0
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 1.9e-07 59.3 100 37.0
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.5e-07 58.9 99 41.4
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.5e-07 58.9 92 40.2
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 3.2e-07 58.5 100 38.0
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 7.2e-07 57.4 95 41.1
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 9.3e-07 57.0 102 39.2
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-06 56.6 97 40.2
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.6e-06 56.2 102 38.2
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 1.6e-06 56.2 95 38.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 2.7e-06 55.5 97 38.1
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 7.9e-06 53.9 104 40.4
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 7.9e-06 53.9 95 37.9


User provided reference genes

Program Settings