Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 1.2e-33 146.0 73 100.0
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 2.8e-32 141.4 73 95.9
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 4.5e-30 134.0 73 91.8
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 4.5e-30 134.0 73 91.8
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.0e-29 132.9 73 90.4
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 1.0e-29 132.9 73 91.8
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.0e-29 132.9 73 90.4
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 1.7e-29 132.1 73 90.4
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 3.8e-29 131.0 73 89.0
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 9.4e-28 126.3 73 89.0
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 9.4e-28 126.3 73 89.0
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 6.1e-27 123.6 73 87.7
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 1.8e-26 122.1 74 83.8
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 5.2e-26 120.6 73 86.3
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 2.0e-25 118.6 73 84.9
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 2.2e-24 115.2 73 82.2
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.6e-22 109.0 73 75.3
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 3.8e-21 104.4 73 72.6
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 1.1e-20 102.8 73 67.1
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 3.3e-20 101.3 67 71.6
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 3.3e-20 101.3 73 65.8
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 2.1e-19 98.6 76 61.8
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 2.8e-19 98.2 73 67.1
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 2.8e-19 98.2 76 63.2
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 2.8e-19 98.2 73 65.8
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 4.7e-19 97.4 72 66.7
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 6.1e-19 97.1 74 64.9
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 8.0e-19 96.7 73 65.8
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 5.2e-18 94.0 73 67.1
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 5.2e-18 94.0 74 67.6
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 5.2e-18 94.0 71 64.8
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 6.8e-18 93.6 74 66.2
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.2e-17 92.8 73 64.4
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 1.5e-17 92.4 74 63.5
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 1.5e-17 92.4 71 63.4
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.5e-17 92.4 67 71.6
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 2.6e-17 91.7 74 66.2
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.6e-17 91.7 73 64.4
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 5.7e-17 90.5 66 69.7
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.7e-17 90.5 66 66.7
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 7.5e-17 90.1 76 63.2
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 9.8e-17 89.7 74 62.2
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 9.8e-17 89.7 66 68.2
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 1.7e-16 89.0 77 62.3
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.2e-16 88.6 66 68.2
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.8e-16 88.2 49 81.6
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 3.7e-16 87.8 73 61.6
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 4.9e-16 87.4 64 68.8
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 4.9e-16 87.4 73 58.9
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 1.4e-15 85.9 71 63.4
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.4e-15 85.9 72 59.7
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.4e-15 85.9 72 59.7
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 1.4e-15 85.9 72 59.7
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.8e-15 85.5 49 79.6
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 1.8e-15 85.5 73 60.3
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 3.2e-15 84.7 69 63.8
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 5.4e-15 84.0 73 63.0
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 5.4e-15 84.0 73 57.5
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 7.0e-15 83.6 69 63.8
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 9.2e-15 83.2 77 53.2
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 1.2e-14 82.8 57 66.7
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 1.2e-14 82.8 73 61.6
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 2.7e-14 81.6 73 57.5
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 2.7e-14 81.6 73 61.6
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 5.9e-14 80.5 71 53.5
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 1.0e-13 79.7 70 57.1
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 1.3e-13 79.3 46 73.9
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 1.7e-13 79.0 64 57.8
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 1.7e-13 79.0 74 54.1
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 2.9e-13 78.2 64 57.8
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 7.3e-12 73.6 53 58.5
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 7.3e-12 73.6 76 57.9
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 1.2e-11 72.8 49 75.5
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 4.7e-11 70.9 49 65.3
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 4.7e-11 70.9 69 55.1
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 1.0e-10 69.7 75 54.7
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 2.3e-10 68.6 66 48.5
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 6.8e-10 67.0 40 67.5
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 6.8e-10 67.0 70 54.3
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 2.0e-09 65.5 67 53.7
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 4.9e-08 60.8 50 56.0
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 1.4e-07 59.3 50 62.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 1.9e-07 58.9 50 60.0
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 3.2e-07 58.2 50 60.0
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 3.2e-07 58.2 56 48.2
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 7.0e-07 57.0 57 50.9
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 9.2e-07 56.6 54 53.7
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 9.2e-07 56.6 50 60.0


User provided reference genes

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