Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 6.6e-45 183.7 97 100.0
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.2e-39 164.5 98 90.8
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.6e-38 161.0 96 90.6
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 8.7e-37 156.8 98 88.8
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.1e-36 156.4 96 87.5
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.3e-35 152.9 102 85.3
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.8e-34 149.1 97 84.5
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.6e-33 145.2 100 79.0
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 5.8e-33 144.1 101 80.2
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.3e-32 142.9 102 77.5
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.8e-32 141.4 94 77.7
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-31 139.0 91 79.1
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 3.2e-31 138.3 93 80.6
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.6e-30 136.0 101 77.2
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.1e-30 135.6 102 77.5
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 3.5e-30 134.8 98 71.4
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 7.9e-30 133.7 88 77.3
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.0e-29 133.3 90 78.9
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.3e-29 132.9 89 78.7
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 3.9e-29 131.3 87 80.5
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 6.7e-29 130.6 98 74.5
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.1e-28 129.8 91 76.9
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.5e-28 129.4 89 76.4
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 7.4e-28 127.1 89 75.3
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.8e-27 125.2 93 75.3
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 6.2e-27 124.0 97 72.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 3.1e-26 121.7 97 71.1
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 4.0e-26 121.3 97 69.1
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 5.3e-26 120.9 90 71.1
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 9.0e-26 120.2 73 82.2
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 9.0e-26 120.2 73 82.2
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.0e-25 119.0 88 69.3
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.6e-25 118.6 83 71.1
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 2.6e-25 118.6 64 87.5
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 4.5e-25 117.9 67 83.6
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 9.9e-25 116.7 85 71.8
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.9e-24 115.2 80 71.2
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.9e-24 115.2 88 68.2
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 6.4e-24 114.0 89 68.5
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.1e-23 113.2 85 68.2
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.1e-23 113.2 85 68.2
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.1e-23 113.2 78 73.1
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.1e-23 113.2 82 70.7
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.4e-23 112.8 80 70.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.4e-23 112.8 82 67.1
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.4e-23 112.1 83 69.9
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.4e-23 112.1 84 69.0
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 3.2e-23 111.7 88 67.0
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.2e-23 111.7 83 68.7
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.2e-23 111.7 78 69.2
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 4.2e-23 111.3 88 65.9
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.1e-23 110.5 64 79.7
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.1e-23 110.5 64 79.7
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 7.1e-23 110.5 64 79.7
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 7.1e-23 110.5 90 62.2
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.3e-23 110.2 88 64.8
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 9.3e-23 110.2 80 70.0
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 9.3e-23 110.2 81 66.7
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-22 109.8 122 53.3
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.2e-22 109.8 83 67.5
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.2e-22 109.8 85 67.1
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.6e-22 109.4 64 78.1
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.6e-22 109.4 88 65.9
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 2.1e-22 109.0 62 77.4
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.7e-22 108.6 88 64.8
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 4.6e-22 107.8 89 59.6
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 4.6e-22 107.8 89 59.6
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 4.6e-22 107.8 84 63.1
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.0e-22 107.5 64 78.1
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 6.0e-22 107.5 68 76.5
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 6.0e-22 107.5 78 69.2
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 6.0e-22 107.5 88 63.6
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 6.0e-22 107.5 78 66.7
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 7.9e-22 107.1 86 61.6
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 7.9e-22 107.1 85 62.4
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.0e-21 106.7 88 63.6
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 1.0e-21 106.7 65 72.3
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.3e-21 106.3 81 63.0
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 1.3e-21 106.3 62 77.4
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.3e-21 106.3 88 62.5
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.3e-21 106.3 91 59.3
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.8e-21 105.9 72 69.4
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 2.3e-21 105.5 88 63.6
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.3e-21 105.5 69 73.9
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 2.3e-21 105.5 84 65.5
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.0e-21 105.1 90 61.1
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 3.0e-21 105.1 83 66.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 3.9e-21 104.8 94 58.5
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 3.9e-21 104.8 89 59.6
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 6.7e-21 104.0 74 67.6
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 6.7e-21 104.0 74 67.6
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 6.7e-21 104.0 71 67.6
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.7e-21 104.0 65 69.2
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 6.7e-21 104.0 88 60.2
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 8.7e-21 103.6 87 62.1
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.1e-20 103.2 78 67.9
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.5e-20 102.8 88 60.2
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.5e-20 102.8 66 74.2
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.5e-20 102.8 66 74.2
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.5e-20 102.8 78 66.7
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.9e-20 102.4 78 65.4
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.9e-20 102.4 88 59.1
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.9e-20 102.4 68 69.1
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 4.3e-20 101.3 83 59.0
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 4.3e-20 101.3 86 58.1
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 7.4e-20 100.5 67 71.6
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 7.4e-20 100.5 62 69.4
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 7.4e-20 100.5 78 66.7
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 9.6e-20 100.1 77 63.6
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 9.6e-20 100.1 68 67.6
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 9.6e-20 100.1 86 59.3
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.3e-19 99.8 68 67.6
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.6e-19 99.4 62 69.4
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.1e-19 99.0 94 53.2
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.1e-19 99.0 73 65.8
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.7e-19 98.2 97 54.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 6.2e-19 97.4 101 56.4
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 6.2e-19 97.4 82 63.4
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 6.2e-19 97.4 73 64.4
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 8.2e-19 97.1 79 60.8
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.1e-18 96.7 62 74.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.4e-18 96.3 54 79.6
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.4e-18 96.3 62 67.7
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.1e-18 95.1 89 57.3
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 6.9e-18 94.0 62 66.1
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.2e-17 93.2 66 65.2
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 1.2e-17 93.2 62 69.4
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.2e-17 93.2 62 66.1
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.4e-17 91.7 84 53.6
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.4e-17 91.7 68 64.7
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 3.4e-17 91.7 75 61.3
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 4.5e-17 91.3 88 52.3
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 7.6e-17 90.5 91 53.8
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.0e-16 90.1 61 68.9
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.0e-16 90.1 61 68.9
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 2.9e-16 88.6 88 53.4
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 2.9e-16 88.6 88 53.4
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 4.2e-15 84.7 63 61.9
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.5e-15 84.3 59 66.1
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 7.1e-15 84.0 71 52.1
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.1e-15 84.0 90 48.9
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.6e-14 82.8 59 64.4
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.1e-14 82.4 75 53.3
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-14 82.4 59 64.4
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 4.6e-14 81.3 61 62.3
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 3.0e-13 78.6 90 46.7
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 5.1e-13 77.8 102 45.1
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 6.7e-13 77.4 73 53.4
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.3e-12 74.7 75 53.3
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.7e-12 74.3 53 64.2
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 4.8e-11 71.2 56 76.8
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.4e-10 69.7 72 48.6
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.4e-10 68.9 60 48.3
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 6.9e-10 67.4 49 65.3
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.2e-07 58.5 35 74.3
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.1e-06 55.8 42 64.3


User provided reference genes

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